RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 PTPN14Q15678 1187 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 BMP2KLQ5H9B9 411 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 PPP1R26Q5T8A7 1209 aaPredicted RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 PPP2R2DQ66LE6 453 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 RINLQ6ZS11 566 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 MORC1Q86VD1 984 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 ZNF526Q8TF50 670 aaPredicted RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 ZNF428Q96B54 188 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 SLC10A4Q96EP9 437 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 TSEN34Q9BSV6 310 aaKnown RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 VEZTQ9HBM0 779 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 SPATS2LQ9NUQ6 558 aaKnown RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 CPSF2Q9P2I0 782 aaKnown RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 CLIP2Q9UDT6 1046 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 SERPINA10Q9UK55 444 aa6.78□□□□□ -1.32
CD44-225ENST00000527326 SUPT6HQ7KZ85 1726 aaKnown RBP6.78□□□□□ -1.32
CD44-225ENST00000527326 KIAA0586Q9BVV6 1533 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 SCP2P22307 547 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 MAGEA8P43361 318 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 INHBEP58166 350 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 GRIK3Q13003 919 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 MSL3Q8N5Y2 521 aaKnown RBP6.77□□□□□ -1.33
CD44-225ENST00000527326 TMEM87AQ8NBN3 555 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 CCDC97Q96F63 343 aaPredicted RBP6.77□□□□□ -1.33
CD44-225ENST00000527326 KCTD15Q96SI1 283 aaPredicted RBP6.77□□□□□ -1.33
CD44-225ENST00000527326 TSPAN18Q96SJ8 248 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 SRRTQ9BXP5 876 aaKnown RBP6.77□□□□□ -1.33
CD44-225ENST00000527326 TRIM6Q9C030 488 aaPredicted RBP6.77□□□□□ -1.33
CD44-225ENST00000527326 L2HGDHQ9H9P8 463 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 PGPEP1Q9NXJ5 209 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 GLI2P10070 1586 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 HECW2Q9P2P5 1572 aa6.77□□□□□ -1.33
CD44-225ENST00000527326 ZC3H4Q9UPT8 1303 aaKnown RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 CARMIL2Q6F5E8 1435 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 ANKRD50Q9ULJ7 1429 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 PES1O00541 588 aaKnown RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 U2SURPO15042 1029 aaKnown RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 KINO60870 393 aaKnown RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 PPFIA2O75334 1257 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 MX1P20591 662 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 PTGS1P23219 599 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 PAX7P23759 505 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 CDC25BP30305 580 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 NF2P35240 595 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 RDXP35241 583 aaKnown RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 PTK2Q05397 1052 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 DDR1Q08345 913 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 SMC1AQ14683 1233 aaKnown RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 ZRSR2Q15696 482 aaKnown RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 HSP90AB4PQ58FF6 505 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 C1QTNF12Q5T7M4 302 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 NAIF1Q69YI7 327 aaPredicted RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 REXO1L1PQ8IX06 675 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 CCDC26Q8TAB7 109 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 PANK1Q8TE04 598 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 IRAK4Q9NWZ3 460 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 MCM8Q9UJA3 840 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 SMC3Q9UQE7 1217 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 ZNF330Q9Y3S2 320 aaPredicted RBP6.76□□□□□ -1.33
CD44-225ENST00000527326 CCDC141Q6ZP82 1450 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 EHBP1L1Q8N3D4 1523 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 KDM5DQ9BY66 1539 aa6.76□□□□□ -1.33
CD44-225ENST00000527326 IGF1RP08069 1367 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 ROCK1Q13464 1354 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 A0A1B0GUA9 196 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 FAM181BA6NEQ2 426 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 ERLIN2O94905 339 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 BRD1O95696 1058 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 HCLS1P14317 486 aaPredicted RBP6.75□□□□□ -1.33
CD44-225ENST00000527326 PRPHP41219 470 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 CD151P48509 253 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 MRPL12P52815 198 aaKnown RBP6.75□□□□□ -1.33
CD44-225ENST00000527326 CBLBQ13191 982 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 DHX8Q14562 1220 aaKnown RBP6.75□□□□□ -1.33
CD44-225ENST00000527326 CCDC158Q5M9N0 1113 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 TTC19Q6DKK2 380 aaPredicted RBP6.75□□□□□ -1.33
CD44-225ENST00000527326 ZSCAN25Q6NSZ9 544 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 ILDR2Q71H61 639 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 ANKRD18AQ8IVF6 992 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 MICALL1Q8N3F8 863 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 ZSCAN1Q8NBB4 408 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 MTMR14Q8NCE2 650 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 DNMT3LQ9UJW3 386 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 ADAM21Q9UKJ8 722 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 CDV3Q9UKY7 258 aaKnown RBP6.75□□□□□ -1.33
CD44-225ENST00000527326 NSFL1CQ9UNZ2 370 aaKnown RBP6.75□□□□□ -1.33
CD44-225ENST00000527326 ADAMTS8Q9UP79 889 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 ZDHHC9Q9Y397 364 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 PIK3C2GO75747 1445 aa6.75□□□□□ -1.33
CD44-225ENST00000527326 SOS1Q07889 1333 aaPredicted RBP6.75□□□□□ -1.33
CD44-225ENST00000527326 SOS2Q07890 1332 aaPredicted RBP6.75□□□□□ -1.33
CD44-225ENST00000527326 AATKQ6ZMQ8 1374 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 PPFIA4O75335 1185 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 SNUPNO95149 360 aaKnown RBP6.74□□□□□ -1.33
CD44-225ENST00000527326 HNRNPH1P31943 449 aaKnown RBP6.74□□□□□ -1.33
CD44-225ENST00000527326 ABCD1P33897 745 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 MCM2P49736 904 aa6.74□□□□□ -1.33
CD44-225ENST00000527326 RBM5P52756 815 aaKnown RBP eCLIP6.74□□□□□ -1.33
CD44-225ENST00000527326 DHX9Q08211 1270 aaKnown RBP6.74□□□□□ -1.33
CD44-225ENST00000527326 TBC1D8BQ0IIM8 1120 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms