RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 DOLKQ9UPQ8 538 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 PARP3Q9Y6F1 533 aa6.58□□□□□ -1.36
CD44-218ENST00000525469 RGPD2P0DJD1 1756 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 FIGNL2A6NMB9 653 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 PPM1GO15355 546 aaPredicted RBP6.57□□□□□ -1.36
CD44-218ENST00000525469 VSIG8P0DPA2 414 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 CTSOP43234 321 aaPredicted RBP6.57□□□□□ -1.36
CD44-218ENST00000525469 PTSQ03393 145 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 VAC14Q08AM6 782 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 LYSMD3Q7Z3D4 306 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 RNF217Q8TC41 542 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 DCAF5Q96JK2 942 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 CCDC136Q96JN2 1154 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 CNTNAP1P78357 1384 aa6.57□□□□□ -1.36
CD44-218ENST00000525469 KTN1Q86UP2 1357 aaKnown RBP6.57□□□□□ -1.36
CD44-218ENST00000525469 TOGARAM1Q9Y4F4 1720 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 EVC2Q86UK5 1308 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 FAM181BA6NEQ2 426 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 CCER2I3L3R5 266 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 MEN1O00255 615 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 PPFIA3O75145 1194 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 GNRH1P01148 92 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 GTF2E1P29083 439 aaPredicted RBP6.56□□□□□ -1.36
CD44-218ENST00000525469 ADD1P35611 737 aaKnown RBP6.56□□□□□ -1.36
CD44-218ENST00000525469 VEGFBP49765 207 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 RNF144AP50876 292 aaPredicted RBP6.56□□□□□ -1.36
CD44-218ENST00000525469 MAP2K1Q02750 393 aaPredicted RBP6.56□□□□□ -1.36
CD44-218ENST00000525469 USP4Q13107 963 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.56□□□□□ -1.36
CD44-218ENST00000525469 COG6Q9Y2V7 657 aa6.56□□□□□ -1.36
CD44-218ENST00000525469 CASP8AP2Q9UKL3 1982 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 HSPA8P11142 646 aaKnown RBP6.55□□□□□ -1.36
CD44-218ENST00000525469 NCLP19338 710 aaKnown RBP6.55□□□□□ -1.36
CD44-218ENST00000525469 LMNB1P20700 586 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 CLN3Q13286 438 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 MAP7D1Q3KQU3 841 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 TRAPPC3LQ5T215 181 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 AMIGO3Q86WK7 504 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 RAPGEF4Q8WZA2 1011 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 IP6K1Q92551 441 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 C4AP0C0L4 1744 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 TIAM2Q8IVF5 1701 aa6.55□□□□□ -1.36
CD44-218ENST00000525469 DICER1Q9UPY3 1922 aaKnown RBP6.54□□□□□ -1.36
CD44-218ENST00000525469 CGNL1Q0VF96 1302 aa6.54□□□□□ -1.36
CD44-218ENST00000525469 A0A1W2PRU2 124 aa6.54□□□□□ -1.36
CD44-218ENST00000525469 TMEM88BA6NKF7 163 aa6.54□□□□□ -1.36
CD44-218ENST00000525469 RRP9O43818 475 aaKnown RBP6.54□□□□□ -1.36
CD44-218ENST00000525469 RFC4P35249 363 aa6.54□□□□□ -1.36
CD44-218ENST00000525469 FOXD4L5Q5VV16 416 aaPredicted RBP6.54□□□□□ -1.36
CD44-218ENST00000525469 CCDC155Q8N6L0 562 aa6.54□□□□□ -1.36
CD44-218ENST00000525469 RTCBQ9Y3I0 505 aaKnown RBP6.54□□□□□ -1.36
CD44-218ENST00000525469 PCDH11XQ9BZA7 1347 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 PCDH11YQ9BZA8 1340 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 LOC102724428A0A0B4J2F2 783 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 TRAK2O60296 914 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 TATP17735 454 aaPredicted RBP6.53□□□□□ -1.36
CD44-218ENST00000525469 KCNA3P22001 575 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 GMPRP36959 345 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 SCTRP47872 440 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 AMPHP49418 695 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 SIK1P57059 783 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 RASSF7Q02833 373 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 DEFB115Q30KQ5 88 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 FAM43AQ8N2R8 423 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 LINC00116Q8NCU8 138 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 CCDC85AQ96PX6 553 aaPredicted RBP6.53□□□□□ -1.36
CD44-218ENST00000525469 OSBPL3Q9H4L5 887 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 ARHGEF10LQ9HCE6 1279 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 STK17AQ9UEE5 414 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 MON2Q7Z3U7 1717 aa6.53□□□□□ -1.36
CD44-218ENST00000525469 SLC35F4A4IF30 521 aa6.52□□□□□ -1.37
CD44-218ENST00000525469 OXLD1Q5BKU9 147 aa6.52□□□□□ -1.37
CD44-218ENST00000525469 NME9Q86XW9 330 aa6.52□□□□□ -1.37
CD44-218ENST00000525469 KDF1Q8NAX2 398 aaPredicted RBP6.52□□□□□ -1.37
CD44-218ENST00000525469 USP31Q70CQ4 1352 aa6.52□□□□□ -1.37
CD44-218ENST00000525469 WASHC2AQ641Q2 1341 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 MEGF6O75095 1541 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 MAP2P11137 1827 aaKnown RBP6.51□□□□□ -1.37
CD44-218ENST00000525469 LZTS3O60299 673 aaPredicted RBP6.51□□□□□ -1.37
CD44-218ENST00000525469 ITGA6P23229 1130 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 CHRNA5P30532 468 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 NBPF1Q3BBV0 1214 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 WDR44Q5JSH3 913 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 PRICKLE2Q7Z3G6 844 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 HDGFL2Q7Z4V5 671 aaPredicted RBP6.51□□□□□ -1.37
CD44-218ENST00000525469 PLPP7Q8NBV4 271 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 NANOS1Q8WY41 292 aaKnown RBP6.51□□□□□ -1.37
CD44-218ENST00000525469 GMCL1Q96IK5 515 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 ESYT1Q9BSJ8 1104 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 PPP4R2Q9NY27 417 aa6.51□□□□□ -1.37
CD44-218ENST00000525469 ABT1Q9ULW3 272 aaKnown RBP6.51□□□□□ -1.37
CD44-218ENST00000525469 ERBB4Q15303 1308 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 WDR33Q9C0J8 1336 aaKnown RBP6.5□□□□□ -1.37
CD44-218ENST00000525469 SCN4AP35499 1836 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 IQCA1LA6NCM1 817 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 GYS1P13807 737 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 GNASQ5JWF2 1037 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 FOXR1Q6PIV2 292 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 SV2AQ7L0J3 742 aa6.5□□□□□ -1.37
CD44-218ENST00000525469 LDHDQ86WU2 507 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms