RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 DLGAP5Q15398 846 aa24.51■■□□□ 1.51
HMGCS1-206ENST00000511774 UBE3BQ7Z3V4 1068 aa24.51■■□□□ 1.51
HMGCS1-206ENST00000511774 CD209Q9NNX6 404 aa24.51■■□□□ 1.51
HMGCS1-206ENST00000511774 RANBP2P49792 3224 aaKnown RBP24.51■■□□□ 1.51
HMGCS1-206ENST00000511774 NEURL1BA8MQ27 555 aa24.5■■□□□ 1.51
HMGCS1-206ENST00000511774 H7C1W4 665 aa24.5■■□□□ 1.51
HMGCS1-206ENST00000511774 DDX58O95786 925 aaKnown RBP24.5■■□□□ 1.51
HMGCS1-206ENST00000511774 MTMR14Q8NCE2 650 aa24.5■■□□□ 1.51
HMGCS1-206ENST00000511774 EFCC1Q9HA90 598 aa24.5■■□□□ 1.51
HMGCS1-206ENST00000511774 ZSWIM8A7E2V4 1837 aa24.49■■□□□ 1.51
HMGCS1-206ENST00000511774 USP2O75604 605 aaPredicted RBP24.49■■□□□ 1.51
HMGCS1-206ENST00000511774 ITGA6P23229 1130 aa24.49■■□□□ 1.51
HMGCS1-206ENST00000511774 IGHMBP2P38935 993 aaKnown RBP24.49■■□□□ 1.51
HMGCS1-206ENST00000511774 GNAI1P63096 354 aa24.49■■□□□ 1.51
HMGCS1-206ENST00000511774 G2E3Q7L622 706 aa24.49■■□□□ 1.51
HMGCS1-206ENST00000511774 PRMT6Q96LA8 375 aaPredicted RBP24.49■■□□□ 1.51
HMGCS1-206ENST00000511774 COLQQ9Y215 455 aaPredicted RBP24.49■■□□□ 1.51
HMGCS1-206ENST00000511774 PPP1R12BO60237 982 aaPredicted RBP24.48■■□□□ 1.51
HMGCS1-206ENST00000511774 CHRNDQ07001 517 aa24.48■■□□□ 1.51
HMGCS1-206ENST00000511774 CCDC30Q5VVM6 783 aa24.48■■□□□ 1.51
HMGCS1-206ENST00000511774 ZNF333Q96JL9 665 aa24.48■■□□□ 1.51
HMGCS1-206ENST00000511774 TESPA1A2RU30 521 aaPredicted RBP24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 SPDYE2BA6NHP3 402 aa24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 F8W031 263 aaPredicted RBP24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 APAF1O14727 1248 aa24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 SPDYE6P0CI01 402 aa24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 CASP7P55210 303 aa24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 SP3Q02447 781 aa24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 CFAP100Q494V2 611 aa24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 ANKRD2Q9GZV1 360 aa24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 PPP2R3BQ9Y5P8 575 aa24.47■■□□□ 1.51
HMGCS1-206ENST00000511774 CDAN1Q8IWY9 1227 aa24.46■■□□□ 1.51
HMGCS1-206ENST00000511774 HELBQ8NG08 1087 aaPredicted RBP24.46■■□□□ 1.51
HMGCS1-206ENST00000511774 CNKSR2Q8WXI2 1034 aa24.46■■□□□ 1.51
HMGCS1-206ENST00000511774 JAG2Q9Y219 1238 aa24.46■■□□□ 1.51
HMGCS1-206ENST00000511774 TAF5LO75529 589 aa24.45■■□□□ 1.5
HMGCS1-206ENST00000511774 CSF1RP07333 972 aa24.45■■□□□ 1.5
HMGCS1-206ENST00000511774 MS4A4AQ96JQ5 239 aa24.45■■□□□ 1.5
HMGCS1-206ENST00000511774 PLA2G12BQ9BX93 195 aa24.45■■□□□ 1.5
HMGCS1-206ENST00000511774 VEZTQ9HBM0 779 aa24.45■■□□□ 1.5
HMGCS1-206ENST00000511774 PTCH2Q9Y6C5 1203 aa24.44■■□□□ 1.5
HMGCS1-206ENST00000511774 UNCXA6NJT0 531 aa24.43■■□□□ 1.5
HMGCS1-206ENST00000511774 RASA3Q14644 834 aa24.43■■□□□ 1.5
HMGCS1-206ENST00000511774 SUPT20HL1Q3ZLR7 823 aa24.43■■□□□ 1.5
HMGCS1-206ENST00000511774 MPHOSPH8Q99549 860 aa24.43■■□□□ 1.5
HMGCS1-206ENST00000511774 ELP3Q9H9T3 547 aa24.43■■□□□ 1.5
HMGCS1-206ENST00000511774 KCNJ4P48050 445 aa24.42■■□□□ 1.5
HMGCS1-206ENST00000511774 IREB2P48200 963 aaKnown RBP24.42■■□□□ 1.5
HMGCS1-206ENST00000511774 NEXNQ0ZGT2 675 aa24.42■■□□□ 1.5
HMGCS1-206ENST00000511774 GCKRQ14397 625 aa24.42■■□□□ 1.5
HMGCS1-206ENST00000511774 C15orf52Q6ZUT6 534 aaKnown RBP24.42■■□□□ 1.5
HMGCS1-206ENST00000511774 ANKRD13AQ8IZ07 590 aa24.42■■□□□ 1.5
HMGCS1-206ENST00000511774 BRI3BPQ8WY22 251 aa24.42■■□□□ 1.5
HMGCS1-206ENST00000511774 OPTNQ96CV9 577 aa24.42■■□□□ 1.5
HMGCS1-206ENST00000511774 IL1R1P14778 569 aa24.41■■□□□ 1.5
HMGCS1-206ENST00000511774 OTUD7BQ6GQQ9 843 aa24.41■■□□□ 1.5
HMGCS1-206ENST00000511774 TSR2Q969E8 191 aaKnown RBP24.41■■□□□ 1.5
HMGCS1-206ENST00000511774 MYCP01106 439 aaPredicted RBP24.4■■□□□ 1.5
HMGCS1-206ENST00000511774 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.4■■□□□ 1.5
HMGCS1-206ENST00000511774 H0YGN5 161 aa24.39■■□□□ 1.49
HMGCS1-206ENST00000511774 OTUD5Q96G74 571 aa24.39■■□□□ 1.49
HMGCS1-206ENST00000511774 TEPSINQ96N21 525 aa24.39■■□□□ 1.49
HMGCS1-206ENST00000511774 TMEM106CQ9BVX2 250 aa24.39■■□□□ 1.49
HMGCS1-206ENST00000511774 DDX10Q13206 875 aaKnown RBP24.38■■□□□ 1.49
HMGCS1-206ENST00000511774 FAM43AQ8N2R8 423 aa24.38■■□□□ 1.49
HMGCS1-206ENST00000511774 ARHGAP39Q9C0H5 1083 aa24.38■■□□□ 1.49
HMGCS1-206ENST00000511774 ARAP2Q8WZ64 1704 aa24.38■■□□□ 1.49
HMGCS1-206ENST00000511774 MYO1BO43795 1136 aa24.37■■□□□ 1.49
HMGCS1-206ENST00000511774 FKBP1AP62942 108 aaKnown RBP24.37■■□□□ 1.49
HMGCS1-206ENST00000511774 SLC9C1Q4G0N8 1177 aa24.37■■□□□ 1.49
HMGCS1-206ENST00000511774 ZNF70Q9UC06 446 aaPredicted RBP24.37■■□□□ 1.49
HMGCS1-206ENST00000511774 CALD1Q05682 793 aaKnown RBP24.36■■□□□ 1.49
HMGCS1-206ENST00000511774 TAF1CQ15572 869 aaPredicted RBP24.36■■□□□ 1.49
HMGCS1-206ENST00000511774 SPDYE2Q495Y8 402 aa24.36■■□□□ 1.49
HMGCS1-206ENST00000511774 SH3TC2Q8TF17 1288 aa24.36■■□□□ 1.49
HMGCS1-206ENST00000511774 RBM5P52756 815 aaKnown RBP eCLIP24.35■■□□□ 1.49
HMGCS1-206ENST00000511774 FOXO4P98177 505 aa24.35■■□□□ 1.49
HMGCS1-206ENST00000511774 VGLL4Q14135 290 aa24.35■■□□□ 1.49
HMGCS1-206ENST00000511774 TDRD3Q9H7E2 651 aaKnown RBP24.35■■□□□ 1.49
HMGCS1-206ENST00000511774 CCL15-CCL14A0A0B4J2E2 113 aa24.34■■□□□ 1.49
HMGCS1-206ENST00000511774 ANKRD18BA2A2Z9 1011 aa24.34■■□□□ 1.49
HMGCS1-206ENST00000511774 SLC4A2P04920 1241 aa24.34■■□□□ 1.49
HMGCS1-206ENST00000511774 CCL15Q16663 113 aa24.34■■□□□ 1.49
HMGCS1-206ENST00000511774 SLC4A8Q2Y0W8 1093 aa24.34■■□□□ 1.49
HMGCS1-206ENST00000511774 ZNF804AQ7Z570 1209 aa24.34■■□□□ 1.49
HMGCS1-206ENST00000511774 STK31Q9BXU1 1019 aa24.34■■□□□ 1.49
HMGCS1-206ENST00000511774 TMEM39BQ9GZU3 492 aa24.33■■□□□ 1.49
HMGCS1-206ENST00000511774 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.32■■□□□ 1.48
HMGCS1-206ENST00000511774 ZNF594Q96JF6 807 aaPredicted RBP24.32■■□□□ 1.48
HMGCS1-206ENST00000511774 ZFYVE28Q9HCC9 887 aa24.32■■□□□ 1.48
HMGCS1-206ENST00000511774 FAM205AQ6ZU69 1335 aa24.32■■□□□ 1.48
HMGCS1-206ENST00000511774 FLIIQ13045 1269 aa24.31■■□□□ 1.48
HMGCS1-206ENST00000511774 GRIK5Q16478 980 aa24.31■■□□□ 1.48
HMGCS1-206ENST00000511774 EPHA10Q5JZY3 1008 aa24.31■■□□□ 1.48
HMGCS1-206ENST00000511774 NBPF11Q86T75 865 aa24.31■■□□□ 1.48
HMGCS1-206ENST00000511774 SHISA4Q96DD7 197 aa24.31■■□□□ 1.48
HMGCS1-206ENST00000511774 CHMP4AQ9BY43 222 aa24.31■■□□□ 1.48
HMGCS1-206ENST00000511774 TCP10L2B9ZVM9 353 aa24.3■■□□□ 1.48
HMGCS1-206ENST00000511774 TWISTNBQ3B726 338 aaPredicted RBP24.3■■□□□ 1.48
HMGCS1-206ENST00000511774 CHRDL2Q6WN34 429 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms