RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ARFGEF2Q9Y6D5 1785 aa9.9□□□□□ -0.83
USP54-215ENST00000497106 TRIM29Q14134 588 aa9.9□□□□□ -0.83
USP54-215ENST00000497106 DPP8Q6V1X1 898 aaPredicted RBP9.9□□□□□ -0.83
USP54-215ENST00000497106 C2CD5Q86YS7 1000 aa9.9□□□□□ -0.83
USP54-215ENST00000497106 MPNDQ8N594 471 aa9.9□□□□□ -0.83
USP54-215ENST00000497106 MAGEB6Q8N7X4 407 aa9.9□□□□□ -0.83
USP54-215ENST00000497106 TMOD2Q9NZR1 351 aa9.9□□□□□ -0.83
USP54-215ENST00000497106 USP5P45974 858 aa9.89□□□□□ -0.83
USP54-215ENST00000497106 WDR33Q9C0J8 1336 aaKnown RBP9.89□□□□□ -0.83
USP54-215ENST00000497106 AFDNP55196 1824 aaKnown RBP9.89□□□□□ -0.83
USP54-215ENST00000497106 N4BP2Q86UW6 1770 aaPredicted RBP9.89□□□□□ -0.83
USP54-215ENST00000497106 THSD7AQ9UPZ6 1657 aa9.89□□□□□ -0.83
USP54-215ENST00000497106 PRR5LQ6MZQ0 368 aa9.89□□□□□ -0.83
USP54-215ENST00000497106 UBAC1Q9BSL1 405 aa9.89□□□□□ -0.83
USP54-215ENST00000497106 NHSQ6T4R5 1651 aa9.89□□□□□ -0.83
USP54-215ENST00000497106 CCDC69A6NI79 296 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 ADORA1P30542 326 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 MCM5P33992 734 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 INTS4Q96HW7 963 aaKnown RBP9.88□□□□□ -0.83
USP54-215ENST00000497106 LSG1Q9H089 658 aaKnown RBP9.88□□□□□ -0.83
USP54-215ENST00000497106 FOXD4L1Q9NU39 408 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 MINPP1Q9UNW1 487 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 GLI3P10071 1580 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 MMP10P09238 476 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 GYS1P13807 737 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 XBP1P17861 261 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 HMGN5P82970 282 aaKnown RBP9.88□□□□□ -0.83
USP54-215ENST00000497106 TMTC2Q8N394 836 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 SLC4A4Q9Y6R1 1079 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 TOGARAM1Q9Y4F4 1720 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 PDE4BQ07343 736 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 FAM227BQ96M60 508 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 ITGB4P16144 1822 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 SLC27A2O14975 620 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 PHKA1P46020 1223 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 WASF1Q92558 559 aa9.88□□□□□ -0.83
USP54-215ENST00000497106 CCDC196A0A1B0GTZ2 297 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 GPAA1O43292 621 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 SLC15A2Q16348 729 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 RUFY3Q7L099 469 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 KLHL34Q8N239 644 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 MAP4K1Q92918 833 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 MFSD6Q6ZSS7 791 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 SP8Q8IXZ3 490 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 SYNE4Q8N205 404 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 HDAC9Q9UKV0 1011 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 PCP11498 1178 aaKnown RBP9.87□□□□□ -0.83
USP54-215ENST00000497106 PDE6AP16499 860 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 ADD2P35612 726 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 IQCA1Q86XH1 822 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 SNX14Q9Y5W7 946 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 ZNF532Q9HCE3 1301 aa9.87□□□□□ -0.83
USP54-215ENST00000497106 VIRMAQ69YN4 1812 aaKnown RBP9.87□□□□□ -0.83
USP54-215ENST00000497106 UPF3BQ9BZI7 483 aaKnown RBP9.87□□□□□ -0.83
USP54-215ENST00000497106 A0A0D9SFI3 127 aa9.86□□□□□ -0.83
USP54-215ENST00000497106 PDS5AQ29RF7 1337 aaKnown RBP9.86□□□□□ -0.83
USP54-215ENST00000497106 MBD4O95243 580 aa9.86□□□□□ -0.83
USP54-215ENST00000497106 BCAMP50895 628 aa9.86□□□□□ -0.83
USP54-215ENST00000497106 SAFBQ15424 915 aaKnown RBP eCLIP9.86□□□□□ -0.83
USP54-215ENST00000497106 DHX32Q7L7V1 743 aaKnown RBP9.86□□□□□ -0.83
USP54-215ENST00000497106 POLR3DP05423 398 aaPredicted RBP9.86□□□□□ -0.83
USP54-215ENST00000497106 STYK1Q6J9G0 422 aa9.86□□□□□ -0.83
USP54-215ENST00000497106 ESR2Q92731 530 aa9.86□□□□□ -0.83
USP54-215ENST00000497106 SHANK3Q9BYB0 1731 aa9.86□□□□□ -0.83
USP54-215ENST00000497106 PATL2C9JE40 543 aaKnown RBP9.86□□□□□ -0.83
USP54-215ENST00000497106 TRIM22Q8IYM9 498 aa9.86□□□□□ -0.83
USP54-215ENST00000497106 EN1Q05925 392 aaPredicted RBP9.85□□□□□ -0.83
USP54-215ENST00000497106 RRP12Q5JTH9 1297 aaKnown RBP9.85□□□□□ -0.83
USP54-215ENST00000497106 CELF1Q92879 486 aaKnown RBP9.85□□□□□ -0.83
USP54-215ENST00000497106 COA1Q9GZY4 146 aa9.85□□□□□ -0.83
USP54-215ENST00000497106 RIC1Q4ADV7 1423 aa9.85□□□□□ -0.83
USP54-215ENST00000497106 HLA-DOAP06340 250 aa9.85□□□□□ -0.83
USP54-215ENST00000497106 RPS6KB1P23443 525 aa9.85□□□□□ -0.83
USP54-215ENST00000497106 BRMS1Q9HCU9 246 aa9.85□□□□□ -0.83
USP54-215ENST00000497106 GYG1P46976 350 aa9.85□□□□□ -0.83
USP54-215ENST00000497106 CCDC34Q96HJ3 373 aa9.85□□□□□ -0.83
USP54-215ENST00000497106 TMX3Q96JJ7 454 aa9.85□□□□□ -0.83
USP54-215ENST00000497106 TMEM87BQ96K49 555 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 MCAMP43121 646 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 ZRSR1Q15695 479 aaKnown RBP9.84□□□□□ -0.83
USP54-215ENST00000497106 MSL1Q68DK7 614 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 CCDC24Q8N4L8 307 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 PPP1R1BQ9UD71 204 aaPredicted RBP9.84□□□□□ -0.83
USP54-215ENST00000497106 IQSEC3Q9UPP2 1182 aaPredicted RBP9.84□□□□□ -0.83
USP54-215ENST00000497106 SUGT1Q9Y2Z0 365 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 FGFR2P21802 821 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 RBM5P52756 815 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP54-215ENST00000497106 RASGRF1Q13972 1273 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 RTKN2Q8IZC4 609 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 MINDY4BA8MYZ0 360 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 BCL2L12Q9HB09 334 aa9.84□□□□□ -0.83
USP54-215ENST00000497106 ARPP21Q9UBL0 812 aaPredicted RBP9.84□□□□□ -0.83
USP54-215ENST00000497106 COL23A1Q86Y22 540 aaPredicted RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 ZSWIM6Q9HCJ5 1215 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 CICQ96RK0 1608 aaPredicted RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 HSPD1P10809 573 aaKnown RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 CCDC93Q567U6 631 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 ZNF444Q8N0Y2 327 aaPredicted RBP9.83□□□□□ -0.84
USP54-215ENST00000497106 MKNK2Q9HBH9 465 aa9.83□□□□□ -0.84
USP54-215ENST00000497106 VPS37CA5D8V6 355 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms