RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 SPRED3Q2MJR0 410 aa10.44□□□□□ -0.74
SF3B1-212ENST00000496458 HGSNATQ68CP4 663 aa10.44□□□□□ -0.74
SF3B1-212ENST00000496458 EPS8L3Q8TE67 593 aaKnown RBP10.44□□□□□ -0.74
SF3B1-212ENST00000496458 WFDC12Q8WWY7 111 aa10.44□□□□□ -0.74
SF3B1-212ENST00000496458 WNT8BQ93098 351 aa10.44□□□□□ -0.74
SF3B1-212ENST00000496458 A0A096LPE4 126 aa10.43□□□□□ -0.74
SF3B1-212ENST00000496458 A0A1W2PPZ6 126 aa10.43□□□□□ -0.74
SF3B1-212ENST00000496458 DDX3YO15523 660 aaKnown RBP10.43□□□□□ -0.74
SF3B1-212ENST00000496458 WISP1O95388 367 aa10.43□□□□□ -0.74
SF3B1-212ENST00000496458 NOS3P29474 1203 aa10.43□□□□□ -0.74
SF3B1-212ENST00000496458 MAPK8P45983 427 aa10.43□□□□□ -0.74
SF3B1-212ENST00000496458 OSGEPQ9NPF4 335 aa10.43□□□□□ -0.74
SF3B1-212ENST00000496458 TPSG1Q9NRR2 321 aa10.43□□□□□ -0.74
SF3B1-212ENST00000496458 ADAM11O75078 769 aa10.42□□□□□ -0.74
SF3B1-212ENST00000496458 ALX3O95076 343 aa10.42□□□□□ -0.74
SF3B1-212ENST00000496458 FURINP09958 794 aa10.42□□□□□ -0.74
SF3B1-212ENST00000496458 ARL4DP49703 201 aa10.42□□□□□ -0.74
SF3B1-212ENST00000496458 SUZ12Q15022 739 aaKnown RBP10.42□□□□□ -0.74
SF3B1-212ENST00000496458 ENOX2Q16206 610 aaKnown RBP10.42□□□□□ -0.74
SF3B1-212ENST00000496458 PI16Q6UXB8 463 aa10.42□□□□□ -0.74
SF3B1-212ENST00000496458 AGGF1Q8N302 714 aaeCLIP10.42□□□□□ -0.74
SF3B1-212ENST00000496458 FOXD4L4Q8WXT5 416 aaPredicted RBP10.42□□□□□ -0.74
SF3B1-212ENST00000496458 AKTIPQ9H8T0 292 aa10.42□□□□□ -0.74
SF3B1-212ENST00000496458 F8W735 103 aaPredicted RBP10.41□□□□□ -0.74
SF3B1-212ENST00000496458 SOX1O00570 391 aaPredicted RBP10.41□□□□□ -0.74
SF3B1-212ENST00000496458 NLRP12P59046 1061 aa10.41□□□□□ -0.74
SF3B1-212ENST00000496458 FMR1Q06787 632 aaKnown RBP eCLIP10.41□□□□□ -0.741e-9■■□□□ 13.6
SF3B1-212ENST00000496458 C19orf57Q0VDD7 668 aa10.41□□□□□ -0.74
SF3B1-212ENST00000496458 ACAD11Q709F0 780 aa10.41□□□□□ -0.74
SF3B1-212ENST00000496458 ESRRAP11474 423 aaPredicted RBP10.4□□□□□ -0.74
SF3B1-212ENST00000496458 GRM2Q14416 872 aa10.4□□□□□ -0.74
SF3B1-212ENST00000496458 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.4□□□□□ -0.74
SF3B1-212ENST00000496458 TMEM130Q8N3G9 435 aa10.4□□□□□ -0.74
SF3B1-212ENST00000496458 UBASH3BQ8TF42 649 aa10.4□□□□□ -0.74
SF3B1-212ENST00000496458 NLRP2Q9NX02 1062 aa10.4□□□□□ -0.74
SF3B1-212ENST00000496458 DUOXA2Q1HG44 320 aa10.39□□□□□ -0.75
SF3B1-212ENST00000496458 MEGF10Q96KG7 1140 aa10.39□□□□□ -0.75
SF3B1-212ENST00000496458 CLEC4MQ9H2X3 399 aaPredicted RBP10.39□□□□□ -0.75
SF3B1-212ENST00000496458 ABCB6Q9NP58 842 aa10.39□□□□□ -0.75
SF3B1-212ENST00000496458 PCDH1Q08174 1060 aa10.38□□□□□ -0.75
SF3B1-212ENST00000496458 PRPF40BQ6NWY9 871 aaKnown RBP10.38□□□□□ -0.75
SF3B1-212ENST00000496458 TRAK1Q9UPV9 953 aa10.38□□□□□ -0.75
SF3B1-212ENST00000496458 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.37□□□□□ -0.75
SF3B1-212ENST00000496458 TP53INP1Q96A56 240 aa10.37□□□□□ -0.75
SF3B1-212ENST00000496458 SETDB2Q96T68 719 aa10.37□□□□□ -0.75
SF3B1-212ENST00000496458 SSBP4Q9BWG4 385 aaPredicted RBP10.37□□□□□ -0.75
SF3B1-212ENST00000496458 ZNF576Q9H609 170 aa10.37□□□□□ -0.75
SF3B1-212ENST00000496458 P4HBP07237 508 aaKnown RBP10.36□□□□□ -0.75
SF3B1-212ENST00000496458 GLB1P16278 677 aa10.36□□□□□ -0.75
SF3B1-212ENST00000496458 ITPKAP23677 461 aa10.36□□□□□ -0.75
SF3B1-212ENST00000496458 GSTM4Q03013 218 aa10.36□□□□□ -0.75
SF3B1-212ENST00000496458 ZNF423Q2M1K9 1284 aa10.36□□□□□ -0.75
SF3B1-212ENST00000496458 KIAA1211Q6ZU35 1233 aa10.36□□□□□ -0.75
SF3B1-212ENST00000496458 GLIS3Q8NEA6 775 aa10.36□□□□□ -0.75
SF3B1-212ENST00000496458 SOX17Q9H6I2 414 aaPredicted RBP10.36□□□□□ -0.75
SF3B1-212ENST00000496458 TMEM238LA0A1B0GVL6 79 aa10.35□□□□□ -0.75
SF3B1-212ENST00000496458 RSPO4Q2I0M5 234 aaPredicted RBP10.35□□□□□ -0.75
SF3B1-212ENST00000496458 USP26Q9BXU7 913 aa10.35□□□□□ -0.75
SF3B1-212ENST00000496458 BCO2Q9BYV7 579 aa10.35□□□□□ -0.75
SF3B1-212ENST00000496458 GZF1Q9H116 711 aaPredicted RBP10.35□□□□□ -0.75
SF3B1-212ENST00000496458 WWC3Q9ULE0 1092 aa10.35□□□□□ -0.75
SF3B1-212ENST00000496458 K7ELQ4 463 aaPredicted RBP10.34□□□□□ -0.75
SF3B1-212ENST00000496458 FCGRTP55899 365 aa10.34□□□□□ -0.75
SF3B1-212ENST00000496458 ATP2B2Q01814 1243 aa10.34□□□□□ -0.75
SF3B1-212ENST00000496458 Q6ZS46 218 aa10.34□□□□□ -0.75
SF3B1-212ENST00000496458 ANKRD33BA6NCL7 494 aa10.33□□□□□ -0.76
SF3B1-212ENST00000496458 NKAPLQ5M9Q1 402 aa10.33□□□□□ -0.76
SF3B1-212ENST00000496458 FBF1Q8TES7 1133 aa10.33□□□□□ -0.76
SF3B1-212ENST00000496458 ADAM23O75077 832 aa10.32□□□□□ -0.76
SF3B1-212ENST00000496458 PTPN12Q05209 780 aaKnown RBP10.32□□□□□ -0.76
SF3B1-212ENST00000496458 ALG1LQ6GMV1 187 aa10.32□□□□□ -0.76
SF3B1-212ENST00000496458 NXPE4Q6UWF7 544 aa10.32□□□□□ -0.76
SF3B1-212ENST00000496458 DTHD1Q6ZMT9 781 aa10.32□□□□□ -0.76
SF3B1-212ENST00000496458 DZIP1LQ8IYY4 767 aaKnown RBP10.32□□□□□ -0.76
SF3B1-212ENST00000496458 RUSC1Q9BVN2 902 aa10.32□□□□□ -0.76
SF3B1-212ENST00000496458 SEMA6BQ9H3T3 888 aa10.32□□□□□ -0.76
SF3B1-212ENST00000496458 PPP4R2Q9NY27 417 aa10.32□□□□□ -0.76
SF3B1-212ENST00000496458 B3GALT4O96024 378 aa10.31□□□□□ -0.76
SF3B1-212ENST00000496458 RNF208Q9H0X6 261 aa10.31□□□□□ -0.76
SF3B1-212ENST00000496458 LOC100289279A0A1B0GTE1 492 aa10.3□□□□□ -0.76
SF3B1-212ENST00000496458 DYRK3O43781 588 aa10.3□□□□□ -0.76
SF3B1-212ENST00000496458 LDHBP07195 334 aaKnown RBP10.3□□□□□ -0.76
SF3B1-212ENST00000496458 HOMEZQ8IX15 550 aa10.3□□□□□ -0.76
SF3B1-212ENST00000496458 UBL7Q96S82 380 aaPredicted RBP10.3□□□□□ -0.76
SF3B1-212ENST00000496458 CEP41Q9BYV8 373 aa10.3□□□□□ -0.76
SF3B1-212ENST00000496458 ZNF157P51786 506 aaPredicted RBP10.29□□□□□ -0.76
SF3B1-212ENST00000496458 FAAP100Q0VG06 881 aa10.29□□□□□ -0.76
SF3B1-212ENST00000496458 RPS26P11Q5JNZ5 115 aaPredicted RBP10.29□□□□□ -0.76
SF3B1-212ENST00000496458 NRSN2Q9GZP1 204 aa10.29□□□□□ -0.76
SF3B1-212ENST00000496458 EIF4EBP3O60516 100 aaPredicted RBP10.28□□□□□ -0.76
SF3B1-212ENST00000496458 DLGAP3O95886 979 aa10.28□□□□□ -0.76
SF3B1-212ENST00000496458 DNAJC14Q6Y2X3 702 aaPredicted RBP10.28□□□□□ -0.76
SF3B1-212ENST00000496458 DDX54Q8TDD1 881 aaKnown RBP10.28□□□□□ -0.76
SF3B1-212ENST00000496458 TRIM56Q9BRZ2 755 aaKnown RBP10.28□□□□□ -0.76
SF3B1-212ENST00000496458 H2AFB1P0C5Y9 115 aa10.27□□□□□ -0.77
SF3B1-212ENST00000496458 H2AFB2P0C5Z0 115 aa10.27□□□□□ -0.77
SF3B1-212ENST00000496458 MAOBP27338 520 aa10.27□□□□□ -0.77
SF3B1-212ENST00000496458 CCDC27Q2M243 656 aa10.27□□□□□ -0.77
SF3B1-212ENST00000496458 FDX2Q6P4F2 183 aa10.27□□□□□ -0.77
SF3B1-212ENST00000496458 OSBPL7Q9BZF2 842 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms