RNA–Protein interactions for RNA: ENST00000494458.1

MSH5-217, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-217ENST00000494458 PHF14O94880 888 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 MCCP23508 829 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 GTF2E1P29083 439 aaPredicted RBP8.18□□□□□ -1.1
MSH5-217ENST00000494458 SLC4A3P48751 1232 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 MCM2P49736 904 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 SLC15A2Q16348 729 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 KIAA1211Q6ZU35 1233 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 DDX46Q7L014 1031 aaKnown RBP8.18□□□□□ -1.1
MSH5-217ENST00000494458 HELBQ8NG08 1087 aaPredicted RBP8.18□□□□□ -1.1
MSH5-217ENST00000494458 OSBP2Q969R2 916 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 DNAJC2Q99543 621 aaKnown RBP8.18□□□□□ -1.1
MSH5-217ENST00000494458 ZSWIM6Q9HCJ5 1215 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 PODXL2Q9NZ53 605 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 TFCP2L1Q9NZI6 479 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 NDUFB9Q9Y6M9 179 aa8.18□□□□□ -1.1
MSH5-217ENST00000494458 RPAP1Q9BWH6 1393 aaPredicted RBP8.18□□□□□ -1.1
MSH5-217ENST00000494458 SNAP23O00161 211 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 CHGBP05060 677 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 ADD2P35612 726 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 ATN1P54259 1190 aaPredicted RBP8.17□□□□□ -1.1
MSH5-217ENST00000494458 CUL4AQ13619 759 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 RASGRF1Q13972 1273 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 GORABQ5T7V8 394 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 CREB3L3Q68CJ9 461 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 TMC4Q7Z404 712 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 FBXL16Q8N461 479 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 SPATA5Q8NB90 893 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 APPBP2Q92624 585 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 SEC62Q99442 399 aaKnown RBP8.17□□□□□ -1.1
MSH5-217ENST00000494458 SCUBE2Q9NQ36 999 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 LEMD3Q9Y2U8 911 aa8.17□□□□□ -1.1
MSH5-217ENST00000494458 RBM8AQ9Y5S9 174 aaKnown RBP8.17□□□□□ -1.1
MSH5-217ENST00000494458 WTIPA6NIX2 430 aaPredicted RBP8.16□□□□□ -1.1
MSH5-217ENST00000494458 SLC27A2O14975 620 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 ST18O60284 1047 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 MAST3O60307 1309 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 HSPD1P10809 573 aaKnown RBP8.16□□□□□ -1.1
MSH5-217ENST00000494458 BCAMP50895 628 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 ST5P78524 1137 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 FKBP4Q02790 459 aaKnown RBP eCLIP8.16□□□□□ -1.1
MSH5-217ENST00000494458 ALX1Q15699 326 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 EZH2Q15910 746 aaKnown RBP8.16□□□□□ -1.1
MSH5-217ENST00000494458 ZSCAN25Q6NSZ9 544 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 PI16Q6UXB8 463 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 CCDC125Q86Z20 511 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 HSCBQ8IWL3 235 aa8.16□□□□□ -1.1
MSH5-217ENST00000494458 ANO8Q9HCE9 1232 aaPredicted RBP8.16□□□□□ -1.1
MSH5-217ENST00000494458 PIH1D3Q9NQM4 214 aaKnown RBP8.16□□□□□ -1.1
MSH5-217ENST00000494458 CIZ1Q9ULV3 898 aaPredicted RBP8.16□□□□□ -1.1
MSH5-217ENST00000494458 ZMYM6O95789 1325 aa8.15□□□□□ -1.1
MSH5-217ENST00000494458 SALL1Q9NSC2 1324 aa8.15□□□□□ -1.1
MSH5-217ENST00000494458 SRGNP10124 158 aa8.15□□□□□ -1.1
MSH5-217ENST00000494458 NEK4P51957 841 aa8.15□□□□□ -1.1
MSH5-217ENST00000494458 ADCK5Q3MIX3 580 aa8.15□□□□□ -1.1
MSH5-217ENST00000494458 VPS53Q5VIR6 699 aa8.15□□□□□ -1.1
MSH5-217ENST00000494458 SP8Q8IXZ3 490 aa8.15□□□□□ -1.1
MSH5-217ENST00000494458 INTS4Q96HW7 963 aaKnown RBP8.15□□□□□ -1.1
MSH5-217ENST00000494458 RBM17Q96I25 401 aaKnown RBP8.15□□□□□ -1.1
MSH5-217ENST00000494458 AGXT2Q9BYV1 514 aa8.15□□□□□ -1.1
MSH5-217ENST00000494458 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.15□□□□□ -1.18e-14■■■□□ 17
MSH5-217ENST00000494458 PUS7LQ9H0K6 701 aaKnown RBP8.15□□□□□ -1.1
MSH5-217ENST00000494458 TAF1P21675 1872 aa8.15□□□□□ -1.11
MSH5-217ENST00000494458 DOCK2Q92608 1830 aa8.15□□□□□ -1.11
MSH5-217ENST00000494458 LTBP1Q14766 1721 aa8.15□□□□□ -1.11
MSH5-217ENST00000494458 COL1A1P02452 1464 aaPredicted RBP8.14□□□□□ -1.11
MSH5-217ENST00000494458 XDHP47989 1333 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 M0R2C6 588 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 CYP21A2P08686 494 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 PDE6AP16499 860 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 EN1Q05925 392 aaPredicted RBP8.14□□□□□ -1.11
MSH5-217ENST00000494458 KRT32Q14532 448 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 SLFNL1Q499Z3 407 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 SLC9C2Q5TAH2 1124 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 RNF20Q5VTR2 975 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 PRPF40BQ6NWY9 871 aaKnown RBP8.14□□□□□ -1.11
MSH5-217ENST00000494458 CLEC17AQ6ZS10 378 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 RUFY3Q7L099 469 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 CDAN1Q8IWY9 1227 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 CCDC24Q8N4L8 307 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 TDRD7Q8NHU6 1098 aaKnown RBP8.14□□□□□ -1.11
MSH5-217ENST00000494458 STRBPQ96SI9 672 aaKnown RBP8.14□□□□□ -1.11
MSH5-217ENST00000494458 GNL3LQ9NVN8 582 aaKnown RBP8.14□□□□□ -1.11
MSH5-217ENST00000494458 DENND2AQ9ULE3 1009 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 LRRC37AA6NMS7 1700 aa8.14□□□□□ -1.11
MSH5-217ENST00000494458 ANKRD31Q8N7Z5 1873 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 FGAP02671 866 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 MMP10P09238 476 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 IL1R1P14778 569 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 NPR1P16066 1061 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 ZKSCAN1P17029 563 aaPredicted RBP8.13□□□□□ -1.11
MSH5-217ENST00000494458 ATP2B4P23634 1241 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 PSMA5P28066 241 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 HIBADHP31937 336 aaKnown RBP8.13□□□□□ -1.11
MSH5-217ENST00000494458 PDE6BP35913 854 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 GYG1P46976 350 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 EVCP57679 992 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 EXOSC10Q01780 885 aaKnown RBP8.13□□□□□ -1.11
MSH5-217ENST00000494458 MAP3K12Q12852 859 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 CAVIN4Q5BKX8 364 aa8.13□□□□□ -1.11
MSH5-217ENST00000494458 CCDC129Q6ZRS4 1044 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms