RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 KRT24Q2M2I5 525 aa15.46■□□□□ 0.07
UPF3A-210ENST00000493727 C8orf58Q8NAV2 365 aa15.46■□□□□ 0.07
UPF3A-210ENST00000493727 UTP14AQ9BVJ6 771 aaKnown RBP15.46■□□□□ 0.07
UPF3A-210ENST00000493727 CHMP4AQ9BY43 222 aa15.46■□□□□ 0.07
UPF3A-210ENST00000493727 GJA3Q9Y6H8 435 aa15.46■□□□□ 0.07
UPF3A-210ENST00000493727 LAMB2P55268 1798 aa15.46■□□□□ 0.07
UPF3A-210ENST00000493727 HOXB7P09629 217 aa15.45■□□□□ 0.06
UPF3A-210ENST00000493727 PRKCSHP14314 528 aaPredicted RBP15.45■□□□□ 0.06
UPF3A-210ENST00000493727 LMOD1P29536 600 aaPredicted RBP15.45■□□□□ 0.06
UPF3A-210ENST00000493727 SLC10A5Q5PT55 438 aa15.45■□□□□ 0.06
UPF3A-210ENST00000493727 CST9Q5W186 159 aa15.45■□□□□ 0.06
UPF3A-210ENST00000493727 TSPYL6Q8N831 410 aa15.45■□□□□ 0.06
UPF3A-210ENST00000493727 CAPNS2Q96L46 248 aa15.45■□□□□ 0.06
UPF3A-210ENST00000493727 RCAN3Q9UKA8 241 aa15.45■□□□□ 0.06
UPF3A-210ENST00000493727 PPEF1O14829 653 aaPredicted RBP15.44■□□□□ 0.06
UPF3A-210ENST00000493727 AMHR2Q16671 573 aa15.44■□□□□ 0.06
UPF3A-210ENST00000493727 USP50Q70EL3 339 aaPredicted RBP15.44■□□□□ 0.06
UPF3A-210ENST00000493727 LARGE2Q8N3Y3 721 aa15.44■□□□□ 0.06
UPF3A-210ENST00000493727 VPS33BQ9H267 617 aa15.44■□□□□ 0.06
UPF3A-210ENST00000493727 DAXXQ9UER7 740 aaPredicted RBP15.44■□□□□ 0.06
UPF3A-210ENST00000493727 TLL2Q9Y6L7 1015 aa15.44■□□□□ 0.06
UPF3A-210ENST00000493727 TRAF5O00463 557 aa15.43■□□□□ 0.06
UPF3A-210ENST00000493727 ECE1P42892 770 aa15.43■□□□□ 0.06
UPF3A-210ENST00000493727 PROSER3Q2NL68 480 aa15.43■□□□□ 0.06
UPF3A-210ENST00000493727 CYP4F22Q6NT55 531 aa15.43■□□□□ 0.06
UPF3A-210ENST00000493727 COPS6Q7L5N1 327 aa15.43■□□□□ 0.06
UPF3A-210ENST00000493727 TMUB1Q9BVT8 246 aa15.43■□□□□ 0.06
UPF3A-210ENST00000493727 CASP8AP2Q9UKL3 1982 aa15.43■□□□□ 0.06
UPF3A-210ENST00000493727 ANXA1P04083 346 aa15.42■□□□□ 0.06
UPF3A-210ENST00000493727 AIMP1Q12904 312 aaKnown RBP15.42■□□□□ 0.06
UPF3A-210ENST00000493727 HDGFL1Q5TGJ6 251 aa15.42■□□□□ 0.06
UPF3A-210ENST00000493727 SUPT20HQ8NEM7 779 aa15.42■□□□□ 0.06
UPF3A-210ENST00000493727 XAGE3Q8WTP9 111 aa15.42■□□□□ 0.06
UPF3A-210ENST00000493727 NECTIN2Q92692 538 aa15.42■□□□□ 0.06
UPF3A-210ENST00000493727 ZNF428Q96B54 188 aa15.42■□□□□ 0.06
UPF3A-210ENST00000493727 GPR101Q96P66 508 aaPredicted RBP15.42■□□□□ 0.06
UPF3A-210ENST00000493727 PDE4DIPQ5VU43 2346 aa15.42■□□□□ 0.06
UPF3A-210ENST00000493727 VAMP4O75379 141 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 MDM2Q00987 491 aaPredicted RBP15.41■□□□□ 0.06
UPF3A-210ENST00000493727 TCIRG1Q13488 830 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 CCDC30Q5VVM6 783 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 NLRP10Q86W26 655 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 NIM1KQ8IY84 436 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 SMC4Q9NTJ3 1288 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 GPRC5DQ9NZD1 345 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 ATP6V0A2Q9Y487 856 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 SH3TC1Q8TE82 1336 aa15.41■□□□□ 0.06
UPF3A-210ENST00000493727 PPIP5K2O43314 1243 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 BBOX1O75936 387 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 RGS19P49795 217 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 AOC3Q16853 763 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 SLF2Q8IX21 1173 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 PLBD2Q8NHP8 589 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 BCL2L13Q9BXK5 485 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 STK31Q9BXU1 1019 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 PLSCR2Q9NRY7 297 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 ADARB2Q9NS39 739 aaKnown RBP15.4■□□□□ 0.06
UPF3A-210ENST00000493727 DBF4Q9UBU7 674 aaPredicted RBP15.4■□□□□ 0.06
UPF3A-210ENST00000493727 HPS5Q9UPZ3 1129 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 DUOX1Q9NRD9 1551 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 LRRC37AA6NMS7 1700 aa15.4■□□□□ 0.06
UPF3A-210ENST00000493727 TCERG1O14776 1098 aaKnown RBP15.39■□□□□ 0.05
UPF3A-210ENST00000493727 MAP2K2P36507 400 aa15.39■□□□□ 0.05
UPF3A-210ENST00000493727 RARSP54136 660 aaKnown RBP15.39■□□□□ 0.05
UPF3A-210ENST00000493727 ALDH1L2Q3SY69 923 aa15.39■□□□□ 0.05
UPF3A-210ENST00000493727 DDX46Q7L014 1031 aaKnown RBP15.39■□□□□ 0.05
UPF3A-210ENST00000493727 TMC4Q7Z404 712 aa15.39■□□□□ 0.05
UPF3A-210ENST00000493727 SAPCD2Q86UD0 394 aa15.39■□□□□ 0.05
UPF3A-210ENST00000493727 REPIN1Q9BWE0 567 aaKnown RBP15.39■□□□□ 0.05
UPF3A-210ENST00000493727 RTFDC1Q9BY42 306 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-210ENST00000493727 CHPF2Q9P2E5 772 aa15.39■□□□□ 0.05
UPF3A-210ENST00000493727 TRMT112Q9UI30 125 aaKnown RBP15.39■□□□□ 0.05
UPF3A-210ENST00000493727 TSR3Q9UJK0 312 aaKnown RBP15.39■□□□□ 0.05
UPF3A-210ENST00000493727 TAF1P21675 1872 aa15.39■□□□□ 0.05
UPF3A-210ENST00000493727 ABCC4O15439 1325 aa15.39■□□□□ 0.05
UPF3A-210ENST00000493727 TNRC18O15417 2968 aaPredicted RBP15.38■□□□□ 0.05
UPF3A-210ENST00000493727 AOC2O75106 756 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 PTPN5P54829 565 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 CXCL9Q07325 125 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 SP8Q8IXZ3 490 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 SSH1Q8WYL5 1049 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 HHIPL1Q96JK4 782 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 BEGAINQ9BUH8 593 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 HYPKQ9NX55 129 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 PGAP2Q9UHJ9 254 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 CDHR2Q9BYE9 1310 aa15.38■□□□□ 0.05
UPF3A-210ENST00000493727 GRM1Q13255 1194 aa15.37■□□□□ 0.05
UPF3A-210ENST00000493727 GRAPQ13588 217 aa15.37■□□□□ 0.05
UPF3A-210ENST00000493727 GRAPLQ8TC17 118 aaPredicted RBP15.37■□□□□ 0.05
UPF3A-210ENST00000493727 ZNRF3Q9ULT6 936 aa15.37■□□□□ 0.05
UPF3A-210ENST00000493727 DDX60Q8IY21 1712 aaKnown RBP15.37■□□□□ 0.05
UPF3A-210ENST00000493727 BCAR3O75815 825 aa15.36■□□□□ 0.05
UPF3A-210ENST00000493727 CELF2O95319 508 aaKnown RBP15.36■□□□□ 0.05
UPF3A-210ENST00000493727 HCLS1P14317 486 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-210ENST00000493727 CLCN1P35523 988 aa15.36■□□□□ 0.05
UPF3A-210ENST00000493727 GMPSP49915 693 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-210ENST00000493727 DPP8Q6V1X1 898 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-210ENST00000493727 MPNDQ8N594 471 aa15.36■□□□□ 0.05
UPF3A-210ENST00000493727 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-210ENST00000493727 GLIS2Q9BZE0 524 aaPredicted RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms