RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 TRIOBPQ9H2D6 2365 aa18.32■□□□□ 0.52
PRPF40A-211ENST00000493468 MYO1BO43795 1136 aa18.32■□□□□ 0.52
PRPF40A-211ENST00000493468 GJA5P36382 358 aa18.32■□□□□ 0.52
PRPF40A-211ENST00000493468 NEXNQ0ZGT2 675 aa18.32■□□□□ 0.52
PRPF40A-211ENST00000493468 ANKRD13AQ8IZ07 590 aa18.32■□□□□ 0.52
PRPF40A-211ENST00000493468 PLA2G12BQ9BX93 195 aa18.32■□□□□ 0.52
PRPF40A-211ENST00000493468 CD209Q9NNX6 404 aa18.32■□□□□ 0.52
PRPF40A-211ENST00000493468 IRS2Q9Y4H2 1338 aa18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 SPDYE2BA6NHP3 402 aa18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 ELL2O00472 640 aaPredicted RBP18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 SPDYE6P0CI01 402 aa18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 FKBP1AP62942 108 aaKnown RBP18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 ARHGEF6Q15052 776 aa18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 C15orf52Q6ZUT6 534 aaKnown RBP18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 CERS5Q8N5B7 392 aa18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 PTPN18Q99952 460 aa18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 ADAMTS8Q9UP79 889 aa18.31■□□□□ 0.52
PRPF40A-211ENST00000493468 PI4KAP2A4QPH2 592 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 NEURL1BA8MQ27 555 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 H7C1W4 665 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 ITGA6P23229 1130 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 CAP1Q01518 475 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 NBPF11Q86T75 865 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 PI4KAP1Q8N8J0 262 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 C8orf58Q8NAV2 365 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 MPHOSPH8Q99549 860 aa18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 COLQQ9Y215 455 aaPredicted RBP18.3■□□□□ 0.52
PRPF40A-211ENST00000493468 ARAP2Q8WZ64 1704 aa18.29■□□□□ 0.52
PRPF40A-211ENST00000493468 USP2O75604 605 aaPredicted RBP18.29■□□□□ 0.52
PRPF40A-211ENST00000493468 KCNJ4P48050 445 aa18.29■□□□□ 0.52
PRPF40A-211ENST00000493468 CFAP100Q494V2 611 aa18.29■□□□□ 0.52
PRPF40A-211ENST00000493468 NBPF12Q5TAG4 269 aaPredicted RBP18.29■□□□□ 0.52
PRPF40A-211ENST00000493468 SZT2Q5T011 3432 aa18.29■□□□□ 0.52
PRPF40A-211ENST00000493468 CHRNDQ07001 517 aa18.28■□□□□ 0.52
PRPF40A-211ENST00000493468 CWF19L2Q2TBE0 894 aaKnown RBP18.28■□□□□ 0.52
PRPF40A-211ENST00000493468 SLC9C1Q4G0N8 1177 aa18.28■□□□□ 0.52
PRPF40A-211ENST00000493468 UBE3BQ7Z3V4 1068 aa18.28■□□□□ 0.52
PRPF40A-211ENST00000493468 CACNA1FO60840 1977 aa18.28■□□□□ 0.52
PRPF40A-211ENST00000493468 CLRN2A0PK11 232 aa18.27■□□□□ 0.52
PRPF40A-211ENST00000493468 CSF1RP07333 972 aa18.27■□□□□ 0.52
PRPF40A-211ENST00000493468 IL1R1P14778 569 aa18.27■□□□□ 0.52
PRPF40A-211ENST00000493468 MS4A4AQ96JQ5 239 aa18.27■□□□□ 0.52
PRPF40A-211ENST00000493468 PRMT6Q96LA8 375 aaPredicted RBP18.27■□□□□ 0.52
PRPF40A-211ENST00000493468 PCDHAC2Q9Y5I4 1007 aa18.27■□□□□ 0.52
PRPF40A-211ENST00000493468 TNFAIP1Q13829 316 aa18.26■□□□□ 0.51
PRPF40A-211ENST00000493468 RASA3Q14644 834 aa18.26■□□□□ 0.51
PRPF40A-211ENST00000493468 OPTNQ96CV9 577 aa18.26■□□□□ 0.51
PRPF40A-211ENST00000493468 VEZTQ9HBM0 779 aa18.26■□□□□ 0.51
PRPF40A-211ENST00000493468 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.26■□□□□ 0.51
PRPF40A-211ENST00000493468 PTCH2Q9Y6C5 1203 aa18.26■□□□□ 0.51
PRPF40A-211ENST00000493468 CASP7P55210 303 aa18.25■□□□□ 0.51
PRPF40A-211ENST00000493468 ZNF804AQ7Z570 1209 aa18.25■□□□□ 0.51
PRPF40A-211ENST00000493468 OTUD5Q96G74 571 aa18.25■□□□□ 0.51
PRPF40A-211ENST00000493468 ZFYVE28Q9HCC9 887 aa18.25■□□□□ 0.51
PRPF40A-211ENST00000493468 AOX1Q06278 1338 aa18.24■□□□□ 0.51
PRPF40A-211ENST00000493468 GCKRQ14397 625 aa18.24■□□□□ 0.51
PRPF40A-211ENST00000493468 TAF1CQ15572 869 aaPredicted RBP18.24■□□□□ 0.51
PRPF40A-211ENST00000493468 SLC4A8Q2Y0W8 1093 aa18.24■□□□□ 0.51
PRPF40A-211ENST00000493468 BRI3BPQ8WY22 251 aa18.24■□□□□ 0.51
PRPF40A-211ENST00000493468 STK31Q9BXU1 1019 aa18.24■□□□□ 0.51
PRPF40A-211ENST00000493468 ELP3Q9H9T3 547 aa18.24■□□□□ 0.51
PRPF40A-211ENST00000493468 ZSWIM8A7E2V4 1837 aa18.23■□□□□ 0.51
PRPF40A-211ENST00000493468 F8W031 263 aaPredicted RBP18.23■□□□□ 0.51
PRPF40A-211ENST00000493468 GTF2A2P52657 109 aa18.23■□□□□ 0.51
PRPF40A-211ENST00000493468 SPDYE2Q495Y8 402 aa18.23■□□□□ 0.51
PRPF40A-211ENST00000493468 TSPYL6Q8N831 410 aa18.23■□□□□ 0.51
PRPF40A-211ENST00000493468 RANBP2P49792 3224 aaKnown RBP18.23■□□□□ 0.51
PRPF40A-211ENST00000493468 ANKRD18BA2A2Z9 1011 aa18.22■□□□□ 0.51
PRPF40A-211ENST00000493468 H0YGN5 161 aa18.22■□□□□ 0.51
PRPF40A-211ENST00000493468 APAF1O14727 1248 aa18.22■□□□□ 0.51
PRPF40A-211ENST00000493468 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.22■□□□□ 0.51
PRPF40A-211ENST00000493468 MYH16Q9H6N6 1097 aa18.22■□□□□ 0.51
PRPF40A-211ENST00000493468 ZCCHC17Q9NP64 241 aaKnown RBP18.22■□□□□ 0.51
PRPF40A-211ENST00000493468 CCL15-CCL14A0A0B4J2E2 113 aa18.21■□□□□ 0.51
PRPF40A-211ENST00000493468 GNRH1P01148 92 aa18.21■□□□□ 0.51
PRPF40A-211ENST00000493468 CCL15Q16663 113 aa18.21■□□□□ 0.51
PRPF40A-211ENST00000493468 TEPSINQ96N21 525 aa18.21■□□□□ 0.51
PRPF40A-211ENST00000493468 SERPINA10Q9UK55 444 aa18.21■□□□□ 0.51
PRPF40A-211ENST00000493468 FAM205AQ6ZU69 1335 aa18.21■□□□□ 0.51
PRPF40A-211ENST00000493468 SNAP23O00161 211 aa18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 TAF5LO75529 589 aa18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 WDHD1O75717 1129 aaPredicted RBP18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 RBM5P52756 815 aaKnown RBP eCLIP18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 PRMT2P55345 433 aa18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 VGLL4Q14135 290 aa18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 POTEDQ86YR6 584 aa18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 FAM43AQ8N2R8 423 aa18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 ZNF70Q9UC06 446 aaPredicted RBP18.2■□□□□ 0.5
PRPF40A-211ENST00000493468 TLR2O60603 784 aa18.19■□□□□ 0.5
PRPF40A-211ENST00000493468 MAP3K9P80192 1104 aa18.19■□□□□ 0.5
PRPF40A-211ENST00000493468 LACTBP83111 547 aaPredicted RBP18.19■□□□□ 0.5
PRPF40A-211ENST00000493468 LINS1Q8NG48 757 aa18.19■□□□□ 0.5
PRPF40A-211ENST00000493468 CSADQ9Y600 493 aa18.19■□□□□ 0.5
PRPF40A-211ENST00000493468 SPDYE5A6NIY4 337 aa18.18■□□□□ 0.5
PRPF40A-211ENST00000493468 IFIT5Q13325 482 aaKnown RBP18.18■□□□□ 0.5
PRPF40A-211ENST00000493468 KIF22Q14807 665 aa18.18■□□□□ 0.5
PRPF40A-211ENST00000493468 G2E3Q7L622 706 aa18.18■□□□□ 0.5
PRPF40A-211ENST00000493468 HELBQ8NG08 1087 aaPredicted RBP18.18■□□□□ 0.5
PRPF40A-211ENST00000493468 CNKSR2Q8WXI2 1034 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms