RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 SUGT1Q9Y2Z0 365 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 ARFGEF1Q9Y6D6 1849 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 MAST2Q6P0Q8 1798 aa11.67□□□□□ -0.54
USP54-214ENST00000492357 CACNA1SQ13698 1873 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 SGSM2O43147 1006 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 MAP3K12Q12852 859 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 RASGRF1Q13972 1273 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 UBE3CQ15386 1083 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 TSHZ3Q63HK5 1081 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 ILDR2Q71H61 639 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 PODNQ7Z5L7 613 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 TDRD7Q8NHU6 1098 aaKnown RBP11.66□□□□□ -0.54
USP54-214ENST00000492357 DNAJC2Q99543 621 aaKnown RBP11.66□□□□□ -0.54
USP54-214ENST00000492357 ESYT1Q9BSJ8 1104 aa11.66□□□□□ -0.54
USP54-214ENST00000492357 ZC3H12CQ9C0D7 883 aaKnown RBP11.66□□□□□ -0.54
USP54-214ENST00000492357 FAM205AQ6ZU69 1335 aa11.65□□□□□ -0.54
USP54-214ENST00000492357 LTBP3Q9NS15 1303 aa11.65□□□□□ -0.54
USP54-214ENST00000492357 GOLIM4O00461 696 aa11.65□□□□□ -0.54
USP54-214ENST00000492357 DPEP1P16444 411 aa11.65□□□□□ -0.54
USP54-214ENST00000492357 KCNA3P22001 575 aa11.65□□□□□ -0.54
USP54-214ENST00000492357 BCAMP50895 628 aa11.65□□□□□ -0.54
USP54-214ENST00000492357 FKBP1AP62942 108 aaKnown RBP11.65□□□□□ -0.54
USP54-214ENST00000492357 RPAP1Q9BWH6 1393 aaPredicted RBP11.65□□□□□ -0.55
USP54-214ENST00000492357 C6orf229H3BNL8 230 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 RNF113AO15541 343 aaKnown RBP11.64□□□□□ -0.55
USP54-214ENST00000492357 CYP2E1P05181 493 aaPredicted RBP11.64□□□□□ -0.55
USP54-214ENST00000492357 CHRNA5P30532 468 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 ZAP70P43403 619 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 GYG1P46976 350 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 RBM25P49756 843 aaKnown RBP11.64□□□□□ -0.55
USP54-214ENST00000492357 MMP14P50281 582 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 ANAPC15P60006 121 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 FKBP4Q02790 459 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP54-214ENST00000492357 WASHC4Q2M389 1173 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 DALRD3Q5D0E6 543 aaKnown RBP11.64□□□□□ -0.55
USP54-214ENST00000492357 ZMYM1Q5SVZ6 1142 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 APPBP2Q92624 585 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 IL17RAQ96F46 866 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 BCL11AQ9H165 835 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 POLLQ9UGP5 575 aa11.64□□□□□ -0.55
USP54-214ENST00000492357 CCDC88AQ3V6T2 1871 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 PSDA5PKW4 1024 aaPredicted RBP11.63□□□□□ -0.55
USP54-214ENST00000492357 MCCP23508 829 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 KIAA2012Q0VF49 1180 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 SCARF1Q14162 830 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 MCMDC2Q4G0Z9 681 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 KIAA1211Q6ZU35 1233 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 CD209Q9NNX6 404 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 FER1L6Q2WGJ9 1857 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 PSME4Q14997 1843 aa11.63□□□□□ -0.55
USP54-214ENST00000492357 FRAT2O75474 233 aaPredicted RBP11.62□□□□□ -0.55
USP54-214ENST00000492357 ADD2P35612 726 aa11.62□□□□□ -0.55
USP54-214ENST00000492357 SLF2Q8IX21 1173 aa11.62□□□□□ -0.55
USP54-214ENST00000492357 TBC1D32Q96NH3 1257 aa11.62□□□□□ -0.55
USP54-214ENST00000492357 TSHZ2Q9NRE2 1034 aa11.62□□□□□ -0.55
USP54-214ENST00000492357 MAST3O60307 1309 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 ZMYM6O95789 1325 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 A0A0G2JLW4 131 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 SNAP23O00161 211 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 MAP4K4O95819 1239 aaPredicted RBP11.61□□□□□ -0.55
USP54-214ENST00000492357 LDHCP07864 332 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 GNAT2P19087 354 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 GSTO1P78417 241 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 NMIQ13287 307 aaPredicted RBP11.61□□□□□ -0.55
USP54-214ENST00000492357 DSCC1Q9BVC3 393 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 MRIQ9BWK5 157 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 USP26Q9BXU7 913 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 C22orf23Q9BZE7 217 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 LRP2BPQ9P2M1 347 aa11.61□□□□□ -0.55
USP54-214ENST00000492357 COL1A1P02452 1464 aaPredicted RBP11.61□□□□□ -0.55
USP54-214ENST00000492357 CCDC171Q6TFL3 1326 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 MYO3BQ8WXR4 1341 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 PDE6AP16499 860 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 NT5C2P49902 561 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 SLC9C2Q5TAH2 1124 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 STRIP1Q5VSL9 837 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 CWC27Q6UX04 472 aaKnown RBP11.6□□□□□ -0.55
USP54-214ENST00000492357 ERICH6Q7L0X2 663 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 TXNRD3Q86VQ6 643 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 ANTXR1Q9H6X2 564 aa11.6□□□□□ -0.55
USP54-214ENST00000492357 TCRBV5S4A2TA0A5A2 114 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 G3V3G9 751 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 C21orf2O43822 256 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 ABCB7O75027 752 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 IDH1O75874 414 aaKnown RBP11.59□□□□□ -0.55
USP54-214ENST00000492357 KLRK1P26718 216 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 HDLBPQ00341 1268 aaKnown RBP11.59□□□□□ -0.55
USP54-214ENST00000492357 DCAF8Q5TAQ9 597 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 RNF20Q5VTR2 975 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 MAP4K1Q92918 833 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 FAM163AQ96GL9 167 aaPredicted RBP11.59□□□□□ -0.55
USP54-214ENST00000492357 ANO2Q9NQ90 1003 aa11.59□□□□□ -0.55
USP54-214ENST00000492357 PIH1D3Q9NQM4 214 aaKnown RBP11.59□□□□□ -0.55
USP54-214ENST00000492357 A0A0D9SFI3 127 aa11.58□□□□□ -0.56
USP54-214ENST00000492357 SEC24BO95487 1268 aa11.58□□□□□ -0.56
USP54-214ENST00000492357 LDHBP07195 334 aaKnown RBP11.58□□□□□ -0.56
USP54-214ENST00000492357 TSGA10IPQ3SY00 556 aa11.58□□□□□ -0.56
USP54-214ENST00000492357 GIMAP6Q6P9H5 292 aa11.58□□□□□ -0.56
USP54-214ENST00000492357 PI16Q6UXB8 463 aa11.58□□□□□ -0.56
USP54-214ENST00000492357 KCNB2Q92953 911 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms