RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 FAM169AQ9Y6X4 670 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 CUX2O14529 1486 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 TACC1O75410 805 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 GAS8O95995 478 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 NLRP5P59047 1200 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 FBXW10Q5XX13 1052 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 SLC30A9Q6PML9 568 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 PROCA1Q8NCQ7 364 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-228ENST00000490135 DNAJC25Q9H1X3 360 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 PRDM16Q9HAZ2 1276 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 TBCAO75347 108 aaKnown RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 ZFXP17010 805 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 FAM160A1Q05DH4 1040 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 CUL4BQ13620 913 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 TWISTNBQ3B726 338 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 TRMT1LQ7Z2T5 733 aaKnown RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 CASQ2O14958 399 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 MYO1BO43795 1136 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 ZPR1O75312 459 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 TUBBP07437 444 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 TRIM42Q8IWZ5 723 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 BCAS4Q8TDM0 211 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 EPSTI1Q96J88 318 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 RAB3IPQ96QF0 476 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 STIM2Q9P246 746 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 U3KPZ7 1027 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 ZC3H6P61129 1189 aaKnown RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 ACTN3Q08043 901 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 METTL24Q5JXM2 366 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 GSTA5Q7RTV2 222 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 JADE2Q9NQC1 790 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 TCP11L1Q9NUJ3 509 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 AKAP2Q9Y2D5 859 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 NOC2LQ9Y3T9 749 aaKnown RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 IFIT1P09914 478 aaKnown RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 SYT1P21579 422 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 LRMPQ12912 555 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 MAP7Q14244 749 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 NAA30Q147X3 362 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 GGNBP2Q9H3C7 697 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 C1orf115Q9H7X2 142 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 CABP5Q9NP86 173 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 TACC3Q9Y6A5 838 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 TMED1Q13445 227 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 PROSER2Q86WR7 435 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 TRIM58Q8NG06 486 aa8.16□□□□□ -1.1
SYNE1-228ENST00000490135 PYM1Q9BRP8 204 aaKnown RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.16□□□□□ -1.1
SYNE1-228ENST00000490135 CTAGE9A4FU28 777 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 SLC4A2P04920 1241 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 ATP2A2P16615 1042 aaKnown RBP8.15□□□□□ -1.1
SYNE1-228ENST00000490135 NAPBQ9H115 298 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 VCX3BQ9H321 246 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 VCX3AQ9NNX9 186 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 FRMD4BQ9Y2L6 1034 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 ZNF189O75820 626 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-228ENST00000490135 IDEP14735 1019 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 ADCY2Q08462 1091 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 SSRP1Q08945 709 aaKnown RBP8.15□□□□□ -1.1
SYNE1-228ENST00000490135 PNMA8AQ86V59 439 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-228ENST00000490135 ZGPATQ8N5A5 531 aaKnown RBP8.15□□□□□ -1.1
SYNE1-228ENST00000490135 SMARCC2Q8TAQ2 1214 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 MMRN2Q9H8L6 949 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 PAIP2BQ9ULR5 123 aaKnown RBP8.15□□□□□ -1.1
SYNE1-228ENST00000490135 RANBP6O60518 1105 aaKnown RBP8.15□□□□□ -1.1
SYNE1-228ENST00000490135 VIMP08670 466 aaKnown RBP8.15□□□□□ -1.1
SYNE1-228ENST00000490135 IMPG2Q9BZV3 1241 aa8.15□□□□□ -1.1
SYNE1-228ENST00000490135 ZSCAN22P10073 491 aaPredicted RBP8.15□□□□□ -1.11
SYNE1-228ENST00000490135 USP6NLQ92738 828 aa8.15□□□□□ -1.11
SYNE1-228ENST00000490135 SELENOOQ9BVL4 669 aa8.15□□□□□ -1.11
SYNE1-228ENST00000490135 SLC12A7Q9Y666 1083 aa8.15□□□□□ -1.11
SYNE1-228ENST00000490135 IRF6O14896 467 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 KRT13P13646 458 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 STMN1P16949 149 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 MTHFSP49914 203 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 PSMD7P51665 324 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 GEN1Q17RS7 908 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 GNPTABQ3T906 1256 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 CPLX4Q7Z7G2 160 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 RASEFQ8IZ41 740 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 MSANTD4Q8NCY6 345 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 SPAG5Q96R06 1193 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 TRIM7Q9C029 511 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 RNF41Q9H4P4 317 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-228ENST00000490135 CETN3O15182 167 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 CIB2O75838 187 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 STARD3NLO95772 234 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 DUSP27Q5VZP5 1158 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 MIEF2Q96C03 454 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 ZNF530Q6P9A1 599 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-228ENST00000490135 THOC1Q96FV9 657 aaKnown RBP8.14□□□□□ -1.11
SYNE1-228ENST00000490135 TMX3Q96JJ7 454 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 C8orf76Q96K31 380 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 CNGA1P29973 690 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 BMP2KLQ5H9B9 411 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 CCDC129Q6ZRS4 1044 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 CATIPQ7Z7H3 387 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 TRIML1Q8N9V2 468 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 RPGRQ92834 1020 aaKnown RBP8.14□□□□□ -1.11
SYNE1-228ENST00000490135 GADD45BO75293 160 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms