RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 U2AF1Q01081 240 aaKnown RBP eCLIP15.17■□□□□ 0.02
HDAC6-233ENST00000489352 KIAA0825Q8IV33 1275 aa15.17■□□□□ 0.02
HDAC6-233ENST00000489352 BRI3BPQ8WY22 251 aa15.17■□□□□ 0.02
HDAC6-233ENST00000489352 MS4A4AQ96JQ5 239 aa15.17■□□□□ 0.02
HDAC6-233ENST00000489352 SRRDQ9UH36 339 aa15.17■□□□□ 0.02
HDAC6-233ENST00000489352 ALPK3Q96L96 1907 aa15.16■□□□□ 0.02
HDAC6-233ENST00000489352 USP2O75604 605 aaPredicted RBP15.16■□□□□ 0.02
HDAC6-233ENST00000489352 HSP90B1P14625 803 aaKnown RBP15.16■□□□□ 0.02
HDAC6-233ENST00000489352 CAPN2P17655 700 aa15.16■□□□□ 0.02
HDAC6-233ENST00000489352 PSMC4P43686 418 aa15.16■□□□□ 0.02
HDAC6-233ENST00000489352 C7orf61Q8IZ16 206 aa15.16■□□□□ 0.02
HDAC6-233ENST00000489352 XAGE3Q8WTP9 111 aa15.16■□□□□ 0.02
HDAC6-233ENST00000489352 UBE2OQ9C0C9 1292 aaKnown RBP15.16■□□□□ 0.02
HDAC6-233ENST00000489352 DLG5Q8TDM6 1919 aa15.15■□□□□ 0.02
HDAC6-233ENST00000489352 OTOFQ9HC10 1997 aa15.15■□□□□ 0.02
HDAC6-233ENST00000489352 IRS4O14654 1257 aaPredicted RBP15.15■□□□□ 0.02
HDAC6-233ENST00000489352 NBPF12Q5TAG4 269 aaPredicted RBP15.15■□□□□ 0.02
HDAC6-233ENST00000489352 TTLL5Q6EMB2 1281 aa15.15■□□□□ 0.02
HDAC6-233ENST00000489352 FAM43AQ8N2R8 423 aa15.15■□□□□ 0.02
HDAC6-233ENST00000489352 ZMYND8Q9ULU4 1186 aaPredicted RBP15.15■□□□□ 0.02
HDAC6-233ENST00000489352 COL4A1P02462 1669 aa15.15■□□□□ 0.02
HDAC6-233ENST00000489352 MYPNQ86TC9 1320 aa15.15■□□□□ 0.02
HDAC6-233ENST00000489352 TTC28Q96AY4 2481 aa15.14■□□□□ 0.01
HDAC6-233ENST00000489352 PDIA6Q15084 440 aa15.14■□□□□ 0.01
HDAC6-233ENST00000489352 PROSER3Q2NL68 480 aa15.14■□□□□ 0.01
HDAC6-233ENST00000489352 FAM161BQ96MY7 647 aa15.14■□□□□ 0.01
HDAC6-233ENST00000489352 VEZTQ9HBM0 779 aa15.14■□□□□ 0.01
HDAC6-233ENST00000489352 SEC31BQ9NQW1 1179 aa15.14■□□□□ 0.01
HDAC6-233ENST00000489352 SSC5DA1L4H1 1573 aa15.14■□□□□ 0.01
HDAC6-233ENST00000489352 EYSQ5T1H1 3165 aa15.14■□□□□ 0.01
HDAC6-233ENST00000489352 OSBPP22059 807 aa15.13■□□□□ 0.01
HDAC6-233ENST00000489352 LRP10Q7Z4F1 713 aa15.13■□□□□ 0.01
HDAC6-233ENST00000489352 NECAB2Q7Z6G3 386 aa15.13■□□□□ 0.01
HDAC6-233ENST00000489352 UNC93B1Q9H1C4 597 aa15.13■□□□□ 0.01
HDAC6-233ENST00000489352 RAPGEFL1Q9UHV5 662 aa15.13■□□□□ 0.01
HDAC6-233ENST00000489352 HSPA5P11021 654 aaKnown RBP15.12■□□□□ 0.01
HDAC6-233ENST00000489352 CETPP11597 493 aa15.12■□□□□ 0.01
HDAC6-233ENST00000489352 CCDC152Q4G0S7 254 aa15.12■□□□□ 0.01
HDAC6-233ENST00000489352 ANKRD18AQ8IVF6 992 aa15.12■□□□□ 0.01
HDAC6-233ENST00000489352 SLAIN1Q8ND83 568 aa15.12■□□□□ 0.01
HDAC6-233ENST00000489352 PAWRQ96IZ0 340 aaKnown RBP15.12■□□□□ 0.01
HDAC6-233ENST00000489352 COA1Q9GZY4 146 aa15.12■□□□□ 0.01
HDAC6-233ENST00000489352 CSADQ9Y600 493 aa15.12■□□□□ 0.01
HDAC6-233ENST00000489352 ZNF804BA4D1E1 1349 aa15.12■□□□□ 0.01
HDAC6-233ENST00000489352 CLRN2A0PK11 232 aa15.11■□□□□ 0.01
HDAC6-233ENST00000489352 ATP5J2-PTCD1G3V325 749 aa15.11■□□□□ 0.01
HDAC6-233ENST00000489352 SYN1P17600 705 aa15.11■□□□□ 0.01
HDAC6-233ENST00000489352 MAGEA10P43363 369 aaPredicted RBP15.11■□□□□ 0.01
HDAC6-233ENST00000489352 FAM109BQ6ICB4 259 aaPredicted RBP15.11■□□□□ 0.01
HDAC6-233ENST00000489352 GUCD1Q96NT3 240 aa15.11■□□□□ 0.01
HDAC6-233ENST00000489352 ZCCHC17Q9NP64 241 aaKnown RBP15.11■□□□□ 0.01
HDAC6-233ENST00000489352 MED23Q9ULK4 1368 aa15.11■□□□□ 0.01
HDAC6-233ENST00000489352 TMEM265A0A087WTH1 108 aa15.1■□□□□ 0.01
HDAC6-233ENST00000489352 TNFRSF10AO00220 468 aa15.1■□□□□ 0.01
HDAC6-233ENST00000489352 MAFAQ8NHW3 353 aaPredicted RBP15.1■□□□□ 0.01
HDAC6-233ENST00000489352 CNKSR2Q8WXI2 1034 aa15.1■□□□□ 0.01
HDAC6-233ENST00000489352 ZBED3Q96IU2 234 aaPredicted RBP15.1■□□□□ 0.01
HDAC6-233ENST00000489352 DEFB118Q96PH6 123 aa15.1■□□□□ 0.01
HDAC6-233ENST00000489352 PRUNE2Q8WUY3 3088 aa15.1■□□□□ 0.01
HDAC6-233ENST00000489352 MGAMO43451 1857 aa15.1■□□□□ 0.01
HDAC6-233ENST00000489352 GTF2IP78347 998 aa15.09■□□□□ 0.01
HDAC6-233ENST00000489352 RASA3Q14644 834 aa15.09■□□□□ 0.01
HDAC6-233ENST00000489352 ZNF697Q5TEC3 545 aa15.09■□□□□ 0.01
HDAC6-233ENST00000489352 CPA4Q9UI42 421 aa15.09■□□□□ 0.01
HDAC6-233ENST00000489352 TSPYL4Q9UJ04 414 aa15.09■□□□□ 0.01
HDAC6-233ENST00000489352 SPEF2Q9C093 1822 aa15.08■□□□□ 0.01
HDAC6-233ENST00000489352 POTEB2H3BUK9 544 aa15.08■□□□□ 0
HDAC6-233ENST00000489352 RBM5P52756 815 aaKnown RBP eCLIP15.08■□□□□ 0
HDAC6-233ENST00000489352 MAP3K9P80192 1104 aa15.08■□□□□ 0
HDAC6-233ENST00000489352 TNFAIP1Q13829 316 aa15.08■□□□□ 0
HDAC6-233ENST00000489352 PLBD2Q8NHP8 589 aa15.08■□□□□ 0
HDAC6-233ENST00000489352 CCDC85AQ96PX6 553 aaPredicted RBP15.08■□□□□ 0
HDAC6-233ENST00000489352 LAMA2P24043 3122 aaKnown RBP15.07■□□□□ 0
HDAC6-233ENST00000489352 BTBD19C9JJ37 291 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 ADCY3O60266 1144 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 FCGRTP55899 365 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 PRKCZQ05513 592 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 SNAPC2Q13487 334 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 VGLL4Q14135 290 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 C17orf99Q6UX52 265 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.07■□□□□ 0
HDAC6-233ENST00000489352 MTMR14Q8NCE2 650 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 ISCA1Q9BUE6 129 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 FAM205AQ6ZU69 1335 aa15.07■□□□□ 0
HDAC6-233ENST00000489352 CTGFP29279 349 aa15.06■□□□□ 0
HDAC6-233ENST00000489352 HOXD11P31277 338 aaPredicted RBP15.06■□□□□ 0
HDAC6-233ENST00000489352 CCT4P50991 539 aaKnown RBP15.06■□□□□ 0
HDAC6-233ENST00000489352 CFAP100Q494V2 611 aa15.06■□□□□ 0
HDAC6-233ENST00000489352 MUC3AQ02505 3323 aa15.06■□□□□ 0
HDAC6-233ENST00000489352 F8W031 263 aaPredicted RBP15.05■□□□□ -0
HDAC6-233ENST00000489352 ZBTB38Q8NAP3 1195 aaPredicted RBP15.05■□□□□ -0
HDAC6-233ENST00000489352 CDC5LQ99459 802 aaKnown RBP15.05■□□□□ -0
HDAC6-233ENST00000489352 SPDYE2BA6NHP3 402 aa15.04■□□□□ -0
HDAC6-233ENST00000489352 INHAP05111 366 aa15.04■□□□□ -0
HDAC6-233ENST00000489352 SPDYE6P0CI01 402 aa15.04■□□□□ -0
HDAC6-233ENST00000489352 PRMT6Q96LA8 375 aaPredicted RBP15.04■□□□□ -0
HDAC6-233ENST00000489352 CDX2Q99626 313 aaPredicted RBP15.04■□□□□ -0
HDAC6-233ENST00000489352 NBPF3Q9H094 633 aa15.04■□□□□ -0
HDAC6-233ENST00000489352 PDE8AO60658 829 aa15.03■□□□□ -0
HDAC6-233ENST00000489352 ERO1BQ86YB8 467 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms