RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 CHD4Q14839 1912 aa13.86□□□□□ -0.19
C9orf3-220ENST00000489318 ARFGEF1Q9Y6D6 1849 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 FER1L6Q2WGJ9 1857 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 ADD2P35612 726 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 UBE3CQ15386 1083 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 MCMDC2Q4G0Z9 681 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 CC2D2BQ6DHV5 1058 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 ZSCAN25Q6NSZ9 544 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 ZNF804AQ7Z570 1209 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 TDRD7Q8NHU6 1098 aaKnown RBP13.85□□□□□ -0.19
C9orf3-220ENST00000489318 POLLQ9UGP5 575 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 MAST3O60307 1309 aa13.85□□□□□ -0.19
C9orf3-220ENST00000489318 TCRBV5S4A2TA0A5A2 114 aa13.84□□□□□ -0.19
C9orf3-220ENST00000489318 CHGBP05060 677 aa13.84□□□□□ -0.19
C9orf3-220ENST00000489318 IL1R1P14778 569 aa13.84□□□□□ -0.19
C9orf3-220ENST00000489318 HSPA4P34932 840 aa13.84□□□□□ -0.19
C9orf3-220ENST00000489318 ANAPC15P60006 121 aa13.84□□□□□ -0.19
C9orf3-220ENST00000489318 TGFB2P61812 414 aa13.84□□□□□ -0.19
C9orf3-220ENST00000489318 TMED8Q6PL24 325 aaPredicted RBP13.84□□□□□ -0.19
C9orf3-220ENST00000489318 ZNF589Q86UQ0 364 aaPredicted RBP13.84□□□□□ -0.19
C9orf3-220ENST00000489318 VPS37DQ86XT2 251 aa13.84□□□□□ -0.19
C9orf3-220ENST00000489318 APPBP2Q92624 585 aa13.84□□□□□ -0.19
C9orf3-220ENST00000489318 ZNF622Q969S3 477 aaKnown RBP eCLIP13.84□□□□□ -0.19
C9orf3-220ENST00000489318 RTFDC1Q9BY42 306 aaPredicted RBP13.84□□□□□ -0.19
C9orf3-220ENST00000489318 PDE6AP16499 860 aa13.83□□□□□ -0.2
C9orf3-220ENST00000489318 KCNA3P22001 575 aa13.83□□□□□ -0.2
C9orf3-220ENST00000489318 PTGER2P43116 358 aa13.83□□□□□ -0.2
C9orf3-220ENST00000489318 GRIPAP1Q4V328 841 aa13.83□□□□□ -0.2
C9orf3-220ENST00000489318 MPNDQ8N594 471 aa13.83□□□□□ -0.2
C9orf3-220ENST00000489318 MAP4K1Q92918 833 aa13.83□□□□□ -0.2
C9orf3-220ENST00000489318 KCNB2Q92953 911 aa13.83□□□□□ -0.2
C9orf3-220ENST00000489318 MCCP23508 829 aa13.82□□□□□ -0.2
C9orf3-220ENST00000489318 MAP3K12Q12852 859 aa13.82□□□□□ -0.2
C9orf3-220ENST00000489318 DPP8Q6V1X1 898 aaPredicted RBP13.82□□□□□ -0.2
C9orf3-220ENST00000489318 KIAA1211Q6ZU35 1233 aa13.82□□□□□ -0.2
C9orf3-220ENST00000489318 OSBP2Q969R2 916 aa13.82□□□□□ -0.2
C9orf3-220ENST00000489318 DDRGK1Q96HY6 314 aa13.82□□□□□ -0.2
C9orf3-220ENST00000489318 SEC62Q99442 399 aaKnown RBP13.82□□□□□ -0.2
C9orf3-220ENST00000489318 WWC3Q9ULE0 1092 aa13.82□□□□□ -0.2
C9orf3-220ENST00000489318 TIAM2Q8IVF5 1701 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 M0R2C6 588 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 IDH1O75874 414 aaKnown RBP13.81□□□□□ -0.2
C9orf3-220ENST00000489318 DPEP1P16444 411 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 PTH1RQ03431 593 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 WASHC4Q2M389 1173 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 SLC9C2Q5TAH2 1124 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 OLFM4Q6UX06 510 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 TTLL6Q8N841 843 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 IL27Q8NEV9 243 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 GPR101Q96P66 508 aaPredicted RBP13.81□□□□□ -0.2
C9orf3-220ENST00000489318 DSCC1Q9BVC3 393 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 COA1Q9GZY4 146 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 TMX4Q9H1E5 349 aaPredicted RBP13.81□□□□□ -0.2
C9orf3-220ENST00000489318 CD209Q9NNX6 404 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 IQSEC3Q9UPP2 1182 aaPredicted RBP13.81□□□□□ -0.2
C9orf3-220ENST00000489318 ATF5Q9Y2D1 282 aaPredicted RBP13.81□□□□□ -0.2
C9orf3-220ENST00000489318 CD2APQ9Y5K6 639 aa13.81□□□□□ -0.2
C9orf3-220ENST00000489318 SCN9AQ15858 1988 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 PSDA5PKW4 1024 aaPredicted RBP13.8□□□□□ -0.2
C9orf3-220ENST00000489318 NECTIN1Q15223 517 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 SLFNL1Q499Z3 407 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 ZGPATQ8N5A5 531 aaKnown RBP13.8□□□□□ -0.2
C9orf3-220ENST00000489318 WDR66Q8TBY9 1149 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 EYA3Q99504 573 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 FAM205AQ6ZU69 1335 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 ZNF532Q9HCE3 1301 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 LAMB1P07942 1786 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 CDK5RAP2Q96SN8 1893 aa13.8□□□□□ -0.2
C9orf3-220ENST00000489318 FOCADQ5VW36 1801 aa13.79□□□□□ -0.2
C9orf3-220ENST00000489318 C6orf229H3BNL8 230 aa13.79□□□□□ -0.2
C9orf3-220ENST00000489318 FOXP2O15409 715 aa13.79□□□□□ -0.2
C9orf3-220ENST00000489318 RABEP1Q15276 862 aa13.79□□□□□ -0.2
C9orf3-220ENST00000489318 CCDC129Q6ZRS4 1044 aa13.79□□□□□ -0.2
C9orf3-220ENST00000489318 ILDR2Q71H61 639 aa13.79□□□□□ -0.2
C9orf3-220ENST00000489318 IPO9Q96P70 1041 aaKnown RBP13.79□□□□□ -0.2
C9orf3-220ENST00000489318 PUS7LQ9H0K6 701 aaKnown RBP13.79□□□□□ -0.2
C9orf3-220ENST00000489318 PALD1Q9ULE6 856 aa13.79□□□□□ -0.2
C9orf3-220ENST00000489318 RBM8AQ9Y5S9 174 aaKnown RBP13.79□□□□□ -0.2
C9orf3-220ENST00000489318 ZMYM6O95789 1325 aa13.79□□□□□ -0.2
C9orf3-220ENST00000489318 DDX60LQ5H9U9 1706 aaKnown RBP13.78□□□□□ -0.2
C9orf3-220ENST00000489318 MYH2Q9UKX2 1941 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 GPAA1O43292 621 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 CCDC93Q567U6 631 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 SOGA3Q5TF21 947 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 MAGEB6Q8N7X4 407 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 SUPT20HQ8NEM7 779 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 ZNF384Q8TF68 577 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 PSMD1Q99460 953 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 LRP2BPQ9P2M1 347 aa13.78□□□□□ -0.2
C9orf3-220ENST00000489318 U3KPZ7 1027 aaPredicted RBP13.78□□□□□ -0.2
C9orf3-220ENST00000489318 RPAP1Q9BWH6 1393 aaPredicted RBP13.78□□□□□ -0.2
C9orf3-220ENST00000489318 A0A0G2JLW4 131 aa13.77□□□□□ -0.21
C9orf3-220ENST00000489318 FRAT2O75474 233 aaPredicted RBP13.77□□□□□ -0.21
C9orf3-220ENST00000489318 HSPD1P10809 573 aaKnown RBP13.77□□□□□ -0.21
C9orf3-220ENST00000489318 TSGA10IPQ3SY00 556 aa13.77□□□□□ -0.21
C9orf3-220ENST00000489318 SPTY2D1Q68D10 685 aaPredicted RBP13.77□□□□□ -0.21
C9orf3-220ENST00000489318 ERICH6Q7L0X2 663 aa13.77□□□□□ -0.21
C9orf3-220ENST00000489318 TBC1D22AQ8WUA7 517 aa13.77□□□□□ -0.21
C9orf3-220ENST00000489318 SNX21Q969T3 373 aa13.77□□□□□ -0.21
C9orf3-220ENST00000489318 NSUN4Q96CB9 384 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms