RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 CCDC158Q5M9N0 1113 aa19.22■□□□□ 0.67
SYNE1-227ENST00000489156 CCDC102BQ68D86 513 aa19.22■□□□□ 0.67
SYNE1-227ENST00000489156 VPS37DQ86XT2 251 aa19.22■□□□□ 0.67
SYNE1-227ENST00000489156 DAXXQ9UER7 740 aaPredicted RBP19.22■□□□□ 0.67
SYNE1-227ENST00000489156 LTBP3Q9NS15 1303 aa19.21■□□□□ 0.67
SYNE1-227ENST00000489156 SGSM2O43147 1006 aa19.21■□□□□ 0.67
SYNE1-227ENST00000489156 HIBADHP31937 336 aaKnown RBP19.21■□□□□ 0.67
SYNE1-227ENST00000489156 IARSP41252 1262 aaKnown RBP19.21■□□□□ 0.67
SYNE1-227ENST00000489156 DOK7Q18PE1 504 aa19.21■□□□□ 0.67
SYNE1-227ENST00000489156 FBXO33Q7Z6M2 555 aa19.21■□□□□ 0.67
SYNE1-227ENST00000489156 DIAPH3Q9NSV4 1193 aa19.21■□□□□ 0.67
SYNE1-227ENST00000489156 RFX7Q2KHR2 1363 aa19.21■□□□□ 0.67
SYNE1-227ENST00000489156 MYH13Q9UKX3 1938 aa19.2■□□□□ 0.66
SYNE1-227ENST00000489156 IQSEC3Q9UPP2 1182 aaPredicted RBP19.2■□□□□ 0.66
SYNE1-227ENST00000489156 G3V3G9 751 aa19.2■□□□□ 0.66
SYNE1-227ENST00000489156 GRIN3BO60391 1043 aa19.2■□□□□ 0.66
SYNE1-227ENST00000489156 DCAF8Q5TAQ9 597 aa19.2■□□□□ 0.66
SYNE1-227ENST00000489156 ZNF804AQ7Z570 1209 aa19.2■□□□□ 0.66
SYNE1-227ENST00000489156 LARGE2Q8N3Y3 721 aa19.2■□□□□ 0.66
SYNE1-227ENST00000489156 DBNDD1Q9H9R9 158 aa19.2■□□□□ 0.66
SYNE1-227ENST00000489156 TTC39AQ5SRH9 613 aa19.19■□□□□ 0.66
SYNE1-227ENST00000489156 ZNF512BQ96KM6 892 aaPredicted RBP19.19■□□□□ 0.66
SYNE1-227ENST00000489156 KIF2CQ99661 725 aa19.19■□□□□ 0.66
SYNE1-227ENST00000489156 CD209Q9NNX6 404 aa19.19■□□□□ 0.66
SYNE1-227ENST00000489156 DICER1Q9UPY3 1922 aaKnown RBP19.19■□□□□ 0.66
SYNE1-227ENST00000489156 FSD1Q9BTV5 496 aa19.18■□□□□ 0.66
SYNE1-227ENST00000489156 VPS33BQ9H267 617 aa19.18■□□□□ 0.66
SYNE1-227ENST00000489156 COL4A5P29400 1685 aa19.18■□□□□ 0.66
SYNE1-227ENST00000489156 AKAP11Q9UKA4 1901 aa19.18■□□□□ 0.66
SYNE1-227ENST00000489156 RAD50Q92878 1312 aa19.18■□□□□ 0.66
SYNE1-227ENST00000489156 CWC27Q6UX04 472 aaKnown RBP19.18■□□□□ 0.66
SYNE1-227ENST00000489156 COA1Q9GZY4 146 aa19.18■□□□□ 0.66
SYNE1-227ENST00000489156 ANO2Q9NQ90 1003 aa19.18■□□□□ 0.66
SYNE1-227ENST00000489156 SCN9AQ15858 1988 aa19.18■□□□□ 0.66
SYNE1-227ENST00000489156 SNRKQ9NRH2 765 aa19.17■□□□□ 0.66
SYNE1-227ENST00000489156 ECE2O60344 883 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 FRAT2O75474 233 aaPredicted RBP19.16■□□□□ 0.66
SYNE1-227ENST00000489156 LMNB1P20700 586 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 MCCP23508 829 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 SCARF1Q14162 830 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 KIAA1211Q6ZU35 1233 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 KBTBD3Q8NAB2 608 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 TDRD7Q8NHU6 1098 aaKnown RBP19.16■□□□□ 0.66
SYNE1-227ENST00000489156 DNAJC2Q99543 621 aaKnown RBP19.16■□□□□ 0.66
SYNE1-227ENST00000489156 GNL3LQ9NVN8 582 aaKnown RBP19.16■□□□□ 0.66
SYNE1-227ENST00000489156 PAG1Q9NWQ8 432 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 IL1R1P14778 569 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 ARID4AP29374 1257 aaPredicted RBP19.16■□□□□ 0.66
SYNE1-227ENST00000489156 KCNQ5Q9NR82 932 aa19.16■□□□□ 0.66
SYNE1-227ENST00000489156 UQCRFS1P1P0C7P4 283 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 MCAMP43121 646 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 ANAPC15P60006 121 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 RASGRF1Q13972 1273 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 PI16Q6UXB8 463 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 NIM1KQ8IY84 436 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 IL27Q8NEV9 243 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 JDP2Q8WYK2 163 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 SNX21Q969T3 373 aa19.15■□□□□ 0.66
SYNE1-227ENST00000489156 YDJCA8MPS7 323 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 RABEP1Q15276 862 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 PODNQ7Z5L7 613 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 IL17RAQ96F46 866 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 IL25Q9H293 177 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 JAG2Q9Y219 1238 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 NDUFB9Q9Y6M9 179 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 DCAF8L1A6NGE4 600 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 LRRFIP1Q32MZ4 808 aaKnown RBP19.14■□□□□ 0.65
SYNE1-227ENST00000489156 HMG20BQ9P0W2 317 aa19.14■□□□□ 0.65
SYNE1-227ENST00000489156 MYO5AQ9Y4I1 1855 aaKnown RBP19.13■□□□□ 0.65
SYNE1-227ENST00000489156 CHAF1AQ13111 956 aaPredicted RBP19.13■□□□□ 0.65
SYNE1-227ENST00000489156 EDC3Q96F86 508 aaKnown RBP19.13■□□□□ 0.65
SYNE1-227ENST00000489156 RNF181Q9P0P0 153 aa19.13■□□□□ 0.65
SYNE1-227ENST00000489156 GTF2IP78347 998 aa19.12■□□□□ 0.65
SYNE1-227ENST00000489156 NMIQ13287 307 aaPredicted RBP19.12■□□□□ 0.65
SYNE1-227ENST00000489156 C9orf131Q5VYM1 1079 aa19.12■□□□□ 0.65
SYNE1-227ENST00000489156 SPATA5Q8NB90 893 aa19.12■□□□□ 0.65
SYNE1-227ENST00000489156 TBC1D2Q9BYX2 928 aa19.12■□□□□ 0.65
SYNE1-227ENST00000489156 LSG1Q9H089 658 aaKnown RBP19.12■□□□□ 0.65
SYNE1-227ENST00000489156 DENND2AQ9ULE3 1009 aa19.12■□□□□ 0.65
SYNE1-227ENST00000489156 ZNRF3Q9ULT6 936 aa19.12■□□□□ 0.65
SYNE1-227ENST00000489156 COL1A1P02452 1464 aaPredicted RBP19.12■□□□□ 0.65
SYNE1-227ENST00000489156 GOLIM4O00461 696 aa19.11■□□□□ 0.65
SYNE1-227ENST00000489156 ZAP70P43403 619 aa19.11■□□□□ 0.65
SYNE1-227ENST00000489156 FBXW7Q969H0 707 aa19.11■□□□□ 0.65
SYNE1-227ENST00000489156 PSME4Q14997 1843 aa19.11■□□□□ 0.65
SYNE1-227ENST00000489156 SEMA3EO15041 775 aa19.11■□□□□ 0.65
SYNE1-227ENST00000489156 HSPA4P34932 840 aa19.11■□□□□ 0.65
SYNE1-227ENST00000489156 TTLL5Q6EMB2 1281 aa19.11■□□□□ 0.65
SYNE1-227ENST00000489156 FAM227BQ96M60 508 aa19.11■□□□□ 0.65
SYNE1-227ENST00000489156 RAD17O75943 681 aa19.1■□□□□ 0.65
SYNE1-227ENST00000489156 TTF1Q15361 905 aaPredicted RBP19.09■□□□□ 0.65
SYNE1-227ENST00000489156 HSCBQ8IWL3 235 aa19.09■□□□□ 0.65
SYNE1-227ENST00000489156 TIAM2Q8IVF5 1701 aa19.09■□□□□ 0.65
SYNE1-227ENST00000489156 ZNF646O15015 1829 aaPredicted RBP19.09■□□□□ 0.65
SYNE1-227ENST00000489156 A0A0D9SFI3 127 aa19.09■□□□□ 0.65
SYNE1-227ENST00000489156 FZD9O00144 591 aa19.09■□□□□ 0.65
SYNE1-227ENST00000489156 CYP2E1P05181 493 aaPredicted RBP19.09■□□□□ 0.65
SYNE1-227ENST00000489156 ZFYP08048 801 aaPredicted RBP19.09■□□□□ 0.65
SYNE1-227ENST00000489156 CXCL9Q07325 125 aa19.09■□□□□ 0.65
SYNE1-227ENST00000489156 ERICH6Q7L0X2 663 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms