RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	PARP10	Q53GL7	1025 aa		11.29	□□□□□ -0.6
USP4-213	ENST00000488520	DLK2	Q6UY11	383 aa		11.29	□□□□□ -0.6
USP4-213	ENST00000488520	MPND	Q8N594	471 aa		11.29	□□□□□ -0.6
USP4-213	ENST00000488520	SUPT20H	Q8NEM7	779 aa		11.29	□□□□□ -0.6
USP4-213	ENST00000488520	TRPM4	Q8TD43	1214 aa		11.29	□□□□□ -0.6
USP4-213	ENST00000488520	PLEKHF1	Q96S99	279 aa		11.29	□□□□□ -0.6
USP4-213	ENST00000488520	DUOX1	Q9NRD9	1551 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	TMPO	P42166	694 aa	Known RBP	11.28	□□□□□ -0.6
USP4-213	ENST00000488520	RGS19	P49795	217 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	AIMP1	Q12904	312 aa	Known RBP	11.28	□□□□□ -0.6
USP4-213	ENST00000488520	DGKZ	Q13574	1117 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	HIC1	Q14526	733 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	SLC10A5	Q5PT55	438 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	USP48	Q86UV5	1035 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	ZIC5	Q96T25	663 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	VPS33B	Q9H267	617 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	CNOT7	Q9UIV1	285 aa	Known RBP	11.28	□□□□□ -0.6
USP4-213	ENST00000488520	TSPYL4	Q9UJ04	414 aa		11.28	□□□□□ -0.6
USP4-213	ENST00000488520	COL4A1	P02462	1669 aa		11.27	□□□□□ -0.6
USP4-213	ENST00000488520	MYH3	P11055	1940 aa		11.27	□□□□□ -0.6
USP4-213	ENST00000488520	YDJC	A8MPS7	323 aa		11.27	□□□□□ -0.61
USP4-213	ENST00000488520	CALD1	Q05682	793 aa	Known RBP	11.27	□□□□□ -0.61
USP4-213	ENST00000488520	KIAA2012	Q0VF49	1180 aa		11.27	□□□□□ -0.61
USP4-213	ENST00000488520	TNIP1	Q15025	636 aa		11.27	□□□□□ -0.61
USP4-213	ENST00000488520	DDX46	Q7L014	1031 aa	Known RBP	11.27	□□□□□ -0.61
USP4-213	ENST00000488520	CDC37L1	Q7L3B6	337 aa		11.27	□□□□□ -0.61
USP4-213	ENST00000488520	SP8	Q8IXZ3	490 aa		11.27	□□□□□ -0.61
USP4-213	ENST00000488520	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.27	□□□□□ -0.61
USP4-213	ENST00000488520	PGAP2	Q9UHJ9	254 aa		11.27	□□□□□ -0.61
USP4-213	ENST00000488520	SALL2	Q9Y467	1007 aa	Predicted RBP	11.27	□□□□□ -0.61
USP4-213	ENST00000488520	ERBB4	Q15303	1308 aa		11.27	□□□□□ -0.61
USP4-213	ENST00000488520		H7C1D1	291 aa		11.26	□□□□□ -0.61
USP4-213	ENST00000488520	BBOX1	O75936	387 aa		11.26	□□□□□ -0.61
USP4-213	ENST00000488520	BRPF1	P55201	1214 aa	Predicted RBP	11.26	□□□□□ -0.61
USP4-213	ENST00000488520	HUNK	P57058	714 aa		11.26	□□□□□ -0.61
USP4-213	ENST00000488520	COPS6	Q7L5N1	327 aa		11.26	□□□□□ -0.61
USP4-213	ENST00000488520	SAMD7	Q7Z3H4	446 aa		11.26	□□□□□ -0.61
USP4-213	ENST00000488520	LRP10	Q7Z4F1	713 aa		11.26	□□□□□ -0.61
USP4-213	ENST00000488520	TRMT112	Q9UI30	125 aa	Known RBP	11.26	□□□□□ -0.61
USP4-213	ENST00000488520	GPR37	O15354	613 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	CA12	O43570	354 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	GRAP	Q13588	217 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	NLRP10	Q86W26	655 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	GPIHBP1	Q8IV16	184 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	GRAPL	Q8TC17	118 aa	Predicted RBP	11.25	□□□□□ -0.61
USP4-213	ENST00000488520	XAGE3	Q8WTP9	111 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	ZC3H15	Q8WU90	426 aa	Known RBP	11.25	□□□□□ -0.61
USP4-213	ENST00000488520	HHIPL1	Q96JK4	782 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	DBNDD1	Q9H9R9	158 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	TSR3	Q9UJK0	312 aa	Known RBP	11.25	□□□□□ -0.61
USP4-213	ENST00000488520	HPS5	Q9UPZ3	1129 aa		11.25	□□□□□ -0.61
USP4-213	ENST00000488520	PSMD14	O00487	310 aa		11.24	□□□□□ -0.61
USP4-213	ENST00000488520	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.24	□□□□□ -0.61
USP4-213	ENST00000488520	NYAP1	Q6ZVC0	841 aa		11.24	□□□□□ -0.61
USP4-213	ENST00000488520	PLA2G2E	Q9NZK7	142 aa		11.24	□□□□□ -0.61
USP4-213	ENST00000488520	LAS1L	Q9Y4W2	734 aa	Known RBP	11.24	□□□□□ -0.61
USP4-213	ENST00000488520	ADGRG1	Q9Y653	693 aa		11.24	□□□□□ -0.61
USP4-213	ENST00000488520	CDHR2	Q9BYE9	1310 aa		11.24	□□□□□ -0.61
USP4-213	ENST00000488520	C6orf229	H3BNL8	230 aa		11.23	□□□□□ -0.61
USP4-213	ENST00000488520	EGFR	P00533	1210 aa		11.23	□□□□□ -0.61
USP4-213	ENST00000488520	NOG	Q13253	232 aa		11.23	□□□□□ -0.61
USP4-213	ENST00000488520	TCIRG1	Q13488	830 aa		11.23	□□□□□ -0.61
USP4-213	ENST00000488520	WASHC4	Q2M389	1173 aa		11.23	□□□□□ -0.61
USP4-213	ENST00000488520	HSP90AB3P	Q58FF7	597 aa		11.23	□□□□□ -0.61
USP4-213	ENST00000488520	KCNQ5	Q9NR82	932 aa		11.23	□□□□□ -0.61
USP4-213	ENST00000488520	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.23	□□□□□ -0.61
USP4-213	ENST00000488520	SH3TC1	Q8TE82	1336 aa		11.23	□□□□□ -0.61
USP4-213	ENST00000488520	ADM5	C9JUS6	153 aa		11.22	□□□□□ -0.61
USP4-213	ENST00000488520	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
USP4-213	ENST00000488520	KRT24	Q2M2I5	525 aa		11.22	□□□□□ -0.61
USP4-213	ENST00000488520	RTL5	Q5HYW3	569 aa	Predicted RBP	11.22	□□□□□ -0.61
USP4-213	ENST00000488520	RGMB	Q6NW40	437 aa		11.22	□□□□□ -0.61
USP4-213	ENST00000488520	KRT26	Q7Z3Y9	468 aa		11.22	□□□□□ -0.61
USP4-213	ENST00000488520	GBA2	Q9HCG7	927 aa	Predicted RBP	11.22	□□□□□ -0.61
USP4-213	ENST00000488520	ZNF646	O15015	1829 aa	Predicted RBP	11.21	□□□□□ -0.61
USP4-213	ENST00000488520	FAM155A	B1AL88	458 aa	Predicted RBP	11.21	□□□□□ -0.61
USP4-213	ENST00000488520	TRPA1	O75762	1119 aa		11.21	□□□□□ -0.61
USP4-213	ENST00000488520	ZNF157	P51786	506 aa	Predicted RBP	11.21	□□□□□ -0.61
USP4-213	ENST00000488520	SOX10	P56693	466 aa		11.21	□□□□□ -0.61
USP4-213	ENST00000488520	KIF23	Q02241	960 aa	Predicted RBP	11.21	□□□□□ -0.61
USP4-213	ENST00000488520	CCDC27	Q2M243	656 aa		11.21	□□□□□ -0.61
USP4-213	ENST00000488520	C2orf69	Q8N8R5	385 aa		11.21	□□□□□ -0.61
USP4-213	ENST00000488520	DPF2	Q92785	391 aa		11.21	□□□□□ -0.61
USP4-213	ENST00000488520	CELF1	Q92879	486 aa	Known RBP	11.21	□□□□□ -0.61
USP4-213	ENST00000488520	DCPS	Q96C86	337 aa	Known RBP	11.21	□□□□□ -0.61
USP4-213	ENST00000488520	FAM89A	Q96GI7	184 aa		11.21	□□□□□ -0.61
USP4-213	ENST00000488520	POLL	Q9UGP5	575 aa		11.21	□□□□□ -0.61
USP4-213	ENST00000488520	ATP5J2-PTCD1	G3V325	749 aa		11.2	□□□□□ -0.62
USP4-213	ENST00000488520	ECE2	O60344	883 aa		11.2	□□□□□ -0.62
USP4-213	ENST00000488520	PPP4C	P60510	307 aa		11.2	□□□□□ -0.62
USP4-213	ENST00000488520	GNAI1	P63096	354 aa		11.2	□□□□□ -0.62
USP4-213	ENST00000488520	GPSM2	P81274	684 aa		11.2	□□□□□ -0.62
USP4-213	ENST00000488520	SWT1	Q5T5J6	900 aa	Known RBP	11.2	□□□□□ -0.62
USP4-213	ENST00000488520	WDR63	Q8IWG1	891 aa		11.2	□□□□□ -0.62
USP4-213	ENST00000488520	CHPF2	Q9P2E5	772 aa		11.2	□□□□□ -0.62
USP4-213	ENST00000488520	RTL9	Q8NET4	1388 aa		11.19	□□□□□ -0.62
USP4-213	ENST00000488520	ASTN2	O75129	1339 aa	Predicted RBP	11.19	□□□□□ -0.62
USP4-213	ENST00000488520	DNAJB2	P25686	324 aa		11.19	□□□□□ -0.62
USP4-213	ENST00000488520	TMC4	Q7Z404	712 aa		11.19	□□□□□ -0.62
USP4-213	ENST00000488520	WWC1	Q8IX03	1113 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 190.8 ms