RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 CLIC4Q9Y696 253 aa14.21□□□□□ -0.14
COL3A1-206ENST00000487010 RNF113AO15541 343 aaKnown RBP14.2□□□□□ -0.14
COL3A1-206ENST00000487010 TIMM10P62072 90 aa14.2□□□□□ -0.14
COL3A1-206ENST00000487010 STK38Q15208 465 aa14.2□□□□□ -0.14
COL3A1-206ENST00000487010 SF3A1Q15459 793 aaKnown RBP14.2□□□□□ -0.14
COL3A1-206ENST00000487010 ZRSR1Q15695 479 aaKnown RBP14.2□□□□□ -0.14
COL3A1-206ENST00000487010 ARMCX5Q6P1M9 558 aa14.2□□□□□ -0.14
COL3A1-206ENST00000487010 KCNG4Q8TDN1 519 aa14.2□□□□□ -0.14
COL3A1-206ENST00000487010 IFNKQ9P0W0 207 aa14.2□□□□□ -0.14
COL3A1-206ENST00000487010 NEDD4P46934 1319 aa14.2□□□□□ -0.14
COL3A1-206ENST00000487010 PSDA5PKW4 1024 aaPredicted RBP14.19□□□□□ -0.14
COL3A1-206ENST00000487010 SMC2O95347 1197 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 YEATS4O95619 227 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 KCNJ6P48051 423 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 TTC5Q8N0Z6 440 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 PLBD2Q8NHP8 589 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 PPP1R13BQ96KQ4 1090 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 L2HGDHQ9H9P8 463 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 POLR3EQ9NVU0 708 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 H7C1W4 665 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 NLRP12P59046 1061 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 DHX8Q14562 1220 aaKnown RBP14.19□□□□□ -0.14
COL3A1-206ENST00000487010 TTLL5Q6EMB2 1281 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 OTUD7BQ6GQQ9 843 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 TMC6Q7Z403 805 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 C8orf76Q96K31 380 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 TMEM94Q12767 1356 aa14.19□□□□□ -0.14
COL3A1-206ENST00000487010 TRPM3Q9HCF6 1732 aaPredicted RBP14.18□□□□□ -0.14
COL3A1-206ENST00000487010 M0R2C6 588 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 SPTLC2O15270 562 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 POLR3DP05423 398 aaPredicted RBP14.18□□□□□ -0.14
COL3A1-206ENST00000487010 SLC3A2P08195 630 aaKnown RBP14.18□□□□□ -0.14
COL3A1-206ENST00000487010 TATP17735 454 aaPredicted RBP14.18□□□□□ -0.14
COL3A1-206ENST00000487010 TPM4P67936 248 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 FMNL2Q96PY5 1086 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 GPHNQ9NQX3 736 aaPredicted RBP14.18□□□□□ -0.14
COL3A1-206ENST00000487010 SPEF2Q9C093 1822 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 IFIT1P09914 478 aaKnown RBP14.18□□□□□ -0.14
COL3A1-206ENST00000487010 SFPQP23246 707 aaKnown RBP eCLIP14.18□□□□□ -0.14
COL3A1-206ENST00000487010 IL15P40933 162 aaPredicted RBP14.18□□□□□ -0.14
COL3A1-206ENST00000487010 TERF2Q15554 542 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 KRT28Q7Z3Y7 464 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 BRAPQ7Z569 592 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 IFNL2Q8IZJ0 200 aa14.18□□□□□ -0.14
COL3A1-206ENST00000487010 ZNF202O95125 648 aa14.17□□□□□ -0.14
COL3A1-206ENST00000487010 TUBB4AP04350 444 aa14.17□□□□□ -0.14
COL3A1-206ENST00000487010 NCAPHQ15003 741 aa14.17□□□□□ -0.14
COL3A1-206ENST00000487010 CCDC93Q567U6 631 aa14.17□□□□□ -0.14
COL3A1-206ENST00000487010 MYSM1Q5VVJ2 828 aa14.17□□□□□ -0.14
COL3A1-206ENST00000487010 FBXO18Q8NFZ0 1043 aa14.17□□□□□ -0.14
COL3A1-206ENST00000487010 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.17□□□□□ -0.14
COL3A1-206ENST00000487010 BIN1O00499 593 aa14.16□□□□□ -0.14
COL3A1-206ENST00000487010 DHX16O60231 1041 aaKnown RBP14.16□□□□□ -0.14
COL3A1-206ENST00000487010 ZC3H6P61129 1189 aaKnown RBP14.16□□□□□ -0.14
COL3A1-206ENST00000487010 SYT10Q6XYQ8 523 aa14.16□□□□□ -0.14
COL3A1-206ENST00000487010 OSBP2Q969R2 916 aa14.16□□□□□ -0.14
COL3A1-206ENST00000487010 NLRP2Q9NX02 1062 aa14.16□□□□□ -0.14
COL3A1-206ENST00000487010 NWD2Q9ULI1 1742 aa14.16□□□□□ -0.14
COL3A1-206ENST00000487010 NRDCO43847 1150 aa14.16□□□□□ -0.14
COL3A1-206ENST00000487010 H2AFXP16104 143 aaPredicted RBP14.16□□□□□ -0.14
COL3A1-206ENST00000487010 AXDND1Q5T1B0 1012 aaPredicted RBP14.16□□□□□ -0.14
COL3A1-206ENST00000487010 TAF3Q5VWG9 929 aa14.16□□□□□ -0.14
COL3A1-206ENST00000487010 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.16□□□□□ -0.14
COL3A1-206ENST00000487010 ZNF446Q9NWS9 450 aa14.16□□□□□ -0.14
COL3A1-206ENST00000487010 ORC3Q9UBD5 711 aaPredicted RBP14.16□□□□□ -0.14
COL3A1-206ENST00000487010 KIF1AQ12756 1690 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 EYA2O00167 538 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 IKBKBO14920 756 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 CMA1P23946 247 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 LRRC24Q50LG9 513 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 ANO1Q5XXA6 986 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 SYNE3Q6ZMZ3 975 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 DCAF5Q96JK2 942 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 HPS5Q9UPZ3 1129 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 MEGF6O75095 1541 aa14.15□□□□□ -0.14
COL3A1-206ENST00000487010 KLF18A0A0U1RQI7 1052 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 A0A1B0GUL7 405 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 PRC1O43663 620 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 PFKFB1P16118 471 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 FANCCQ00597 558 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 IMMTQ16891 758 aaKnown RBP14.14□□□□□ -0.15
COL3A1-206ENST00000487010 ERCC6LQ2NKX8 1250 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.14□□□□□ -0.15
COL3A1-206ENST00000487010 LAMB4A4D0S4 1761 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 GOLGA8BA8MQT2 603 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 KIF28PB7ZC32 967 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 NPHP1O15259 732 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 FOXP2O15409 715 aa14.14□□□□□ -0.15
COL3A1-206ENST00000487010 MB21D2Q8IYB1 491 aaPredicted RBP14.14□□□□□ -0.15
COL3A1-206ENST00000487010 SYTL4Q96C24 671 aaPredicted RBP14.14□□□□□ -0.15
COL3A1-206ENST00000487010 CWC25Q9NXE8 425 aaPredicted RBP14.14□□□□□ -0.15
COL3A1-206ENST00000487010 DDX60Q8IY21 1712 aaKnown RBP14.14□□□□□ -0.15
COL3A1-206ENST00000487010 CCP110O43303 1012 aa14.13□□□□□ -0.15
COL3A1-206ENST00000487010 CIAO1O76071 339 aa14.13□□□□□ -0.15
COL3A1-206ENST00000487010 LMOD1P29536 600 aaPredicted RBP14.13□□□□□ -0.15
COL3A1-206ENST00000487010 HAND2P61296 217 aa14.13□□□□□ -0.15
COL3A1-206ENST00000487010 KIF23Q02241 960 aaPredicted RBP14.13□□□□□ -0.15
COL3A1-206ENST00000487010 BMS1Q14692 1282 aaKnown RBP14.13□□□□□ -0.15
COL3A1-206ENST00000487010 LRRFIP1Q32MZ4 808 aaKnown RBP14.13□□□□□ -0.15
COL3A1-206ENST00000487010 LRRN4CLQ8ND94 238 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms