RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 GGA1Q9UJY5 639 aa11.05□□□□□ -0.64
COL12A1-208ENST00000486533 NOB1Q9ULX3 412 aaKnown RBP11.05□□□□□ -0.64
COL12A1-208ENST00000486533 CNTNAP1P78357 1384 aa11.05□□□□□ -0.64
COL12A1-208ENST00000486533 PSMD14O00487 310 aa11.04□□□□□ -0.64
COL12A1-208ENST00000486533 VAMP4O75379 141 aa11.04□□□□□ -0.64
COL12A1-208ENST00000486533 HSPA1AP0DMV8 641 aaKnown RBP11.04□□□□□ -0.64
COL12A1-208ENST00000486533 HSPA1BP0DMV9 641 aaKnown RBP11.04□□□□□ -0.64
COL12A1-208ENST00000486533 ZBTB40Q9NUA8 1239 aa11.04□□□□□ -0.64
COL12A1-208ENST00000486533 PODXL2Q9NZ53 605 aa11.04□□□□□ -0.64
COL12A1-208ENST00000486533 CNOT7Q9UIV1 285 aaKnown RBP11.04□□□□□ -0.64
COL12A1-208ENST00000486533 ISY1Q9ULR0 285 aaKnown RBP11.04□□□□□ -0.64
COL12A1-208ENST00000486533 ABT1Q9ULW3 272 aaKnown RBP11.04□□□□□ -0.64
COL12A1-208ENST00000486533 DDX11L8A8MPP1 907 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 H7C1D1 291 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 TRAF5O00463 557 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 NUCB1Q02818 461 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 FMR1Q06787 632 aaKnown RBP eCLIP11.03□□□□□ -0.64
COL12A1-208ENST00000486533 GCKRQ14397 625 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 MICALL2Q8IY33 904 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 TMEM57Q8N5G2 664 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 TTLL11Q8NHH1 800 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 GREM2Q9H772 168 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 XDHP47989 1333 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 TRPM7Q96QT4 1865 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 SHTN1A0MZ66 631 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 H7C1W4 665 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 VEGFBP49765 207 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 LINS1Q8NG48 757 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 TRPM4Q8TD43 1214 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 KCNQ5Q9NR82 932 aa11.03□□□□□ -0.64
COL12A1-208ENST00000486533 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.03□□□□□ -0.64
COL12A1-208ENST00000486533 SCN9AQ15858 1988 aa11.02□□□□□ -0.65
COL12A1-208ENST00000486533 RTL9Q8NET4 1388 aa11.02□□□□□ -0.65
COL12A1-208ENST00000486533 BMP2KLQ5H9B9 411 aa11.02□□□□□ -0.65
COL12A1-208ENST00000486533 PAXIP1Q6ZW49 1069 aaPredicted RBP11.02□□□□□ -0.65
COL12A1-208ENST00000486533 DPF2Q92785 391 aa11.02□□□□□ -0.65
COL12A1-208ENST00000486533 SNX21Q969T3 373 aa11.02□□□□□ -0.65
COL12A1-208ENST00000486533 TBC1D2Q9BYX2 928 aa11.02□□□□□ -0.65
COL12A1-208ENST00000486533 RASSF10A6NK89 507 aa11.01□□□□□ -0.65
COL12A1-208ENST00000486533 F6X3S4 739 aa11.01□□□□□ -0.65
COL12A1-208ENST00000486533 ATP2B4P23634 1241 aa11.01□□□□□ -0.65
COL12A1-208ENST00000486533 RPS12P25398 132 aaKnown RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 IGHMBP2P38935 993 aaKnown RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 HIRAP54198 1017 aaPredicted RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 MFAP1P55081 439 aaKnown RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 DEFB115Q30KQ5 88 aa11.01□□□□□ -0.65
COL12A1-208ENST00000486533 TBC1D10BQ4KMP7 808 aaPredicted RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 COL13A1Q5TAT6 717 aaPredicted RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 SAMD7Q7Z3H4 446 aa11.01□□□□□ -0.65
COL12A1-208ENST00000486533 ZC3H15Q8WU90 426 aaKnown RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 GLIS2Q9BZE0 524 aaPredicted RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 ANTXR1Q9H6X2 564 aa11.01□□□□□ -0.65
COL12A1-208ENST00000486533 BSDC1Q9NW68 430 aaPredicted RBP11.01□□□□□ -0.65
COL12A1-208ENST00000486533 ITGA6P23229 1130 aa11□□□□□ -0.65
COL12A1-208ENST00000486533 RBM25P49756 843 aaKnown RBP11□□□□□ -0.65
COL12A1-208ENST00000486533 GRM1Q13255 1194 aa11□□□□□ -0.65
COL12A1-208ENST00000486533 RBM26Q5T8P6 1007 aaKnown RBP11□□□□□ -0.65
COL12A1-208ENST00000486533 CHD1LQ86WJ1 897 aa11□□□□□ -0.65
COL12A1-208ENST00000486533 RNF25Q96BH1 459 aaPredicted RBP11□□□□□ -0.65
COL12A1-208ENST00000486533 MPHOSPH8Q99549 860 aa11□□□□□ -0.65
COL12A1-208ENST00000486533 SLKQ9H2G2 1235 aaPredicted RBP11□□□□□ -0.65
COL12A1-208ENST00000486533 ZNF408Q9H9D4 720 aa11□□□□□ -0.65
COL12A1-208ENST00000486533 PCDH10Q9P2E7 1040 aa11□□□□□ -0.65
COL12A1-208ENST00000486533 MINPP1Q9UNW1 487 aa11□□□□□ -0.65
COL12A1-208ENST00000486533 TNNQ9UQP3 1299 aa11□□□□□ -0.65
COL12A1-208ENST00000486533 CELF2O95319 508 aaKnown RBP10.99□□□□□ -0.65
COL12A1-208ENST00000486533 CASP7P55210 303 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 CST9Q5W186 159 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 CDC37L1Q7L3B6 337 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 FAM43AQ8N2R8 423 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 AIDAQ96BJ3 306 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 GBP4Q96PP9 640 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 PLA2G12BQ9BX93 195 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 PGAP2Q9UHJ9 254 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 WTIPA6NIX2 430 aaPredicted RBP10.99□□□□□ -0.65
COL12A1-208ENST00000486533 EGFRP00533 1210 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 VIL1P09327 827 aaKnown RBP10.99□□□□□ -0.65
COL12A1-208ENST00000486533 CCT4P50991 539 aaKnown RBP10.99□□□□□ -0.65
COL12A1-208ENST00000486533 BEND3Q5T5X7 828 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 SLC4A10Q6U841 1118 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 CHMP3Q9Y3E7 222 aa10.99□□□□□ -0.65
COL12A1-208ENST00000486533 WDR33Q9C0J8 1336 aaKnown RBP10.98□□□□□ -0.65
COL12A1-208ENST00000486533 PSME4Q14997 1843 aa10.98□□□□□ -0.65
COL12A1-208ENST00000486533 MED23Q9ULK4 1368 aa10.98□□□□□ -0.65
COL12A1-208ENST00000486533 ANKRD18BA2A2Z9 1011 aa10.98□□□□□ -0.65
COL12A1-208ENST00000486533 RIOK3O14730 519 aaKnown RBP10.98□□□□□ -0.65
COL12A1-208ENST00000486533 KIF4BQ2VIQ3 1234 aa10.98□□□□□ -0.65
COL12A1-208ENST00000486533 SKOR2Q2VWA4 1001 aaPredicted RBP10.98□□□□□ -0.65
COL12A1-208ENST00000486533 RSBN1LQ6PCB5 846 aaPredicted RBP10.98□□□□□ -0.65
COL12A1-208ENST00000486533 CASC1Q6TDU7 716 aa10.98□□□□□ -0.65
COL12A1-208ENST00000486533 KRT26Q7Z3Y9 468 aa10.98□□□□□ -0.65
COL12A1-208ENST00000486533 MRPL50Q8N5N7 158 aaKnown RBP10.98□□□□□ -0.65
COL12A1-208ENST00000486533 CAPNS2Q96L46 248 aa10.98□□□□□ -0.65
COL12A1-208ENST00000486533 POLR2AP24928 1970 aaKnown RBP10.97□□□□□ -0.65
COL12A1-208ENST00000486533 USP17L3A6NCW0 530 aa10.97□□□□□ -0.65
COL12A1-208ENST00000486533 USP17L4A6NCW7 530 aa10.97□□□□□ -0.65
COL12A1-208ENST00000486533 GOLGA6L3A6NEY3 463 aa10.97□□□□□ -0.65
COL12A1-208ENST00000486533 FOXN1O15353 648 aa10.97□□□□□ -0.65
COL12A1-208ENST00000486533 ST18O60284 1047 aa10.97□□□□□ -0.65
COL12A1-208ENST00000486533 CSF1RP07333 972 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms