RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 MAP9Q49MG5 647 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 SDR16C5Q8N3Y7 309 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 USP16Q9Y5T5 823 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 RTL9Q8NET4 1388 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 CFAP69A5D8W1 941 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 LMNB1P20700 586 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 PPP1R18Q6NYC8 613 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 ARMCX6Q7L4S7 300 aa6.59□□□□□ -1.35
CCDC39-205ENST00000485055 RAVER1Q8IY67 606 aaKnown RBP6.59□□□□□ -1.35
CCDC39-205ENST00000485055 MKRN1Q9UHC7 482 aaKnown RBP6.59□□□□□ -1.35
CCDC39-205ENST00000485055 H0YIN7 160 aa6.59□□□□□ -1.36
CCDC39-205ENST00000485055 KCNQ3O43525 872 aa6.59□□□□□ -1.36
CCDC39-205ENST00000485055 HSP90AB3PQ58FF7 597 aa6.59□□□□□ -1.36
CCDC39-205ENST00000485055 DZIP3Q86Y13 1208 aaKnown RBP6.59□□□□□ -1.36
CCDC39-205ENST00000485055 TSR2Q969E8 191 aaKnown RBP6.59□□□□□ -1.36
CCDC39-205ENST00000485055 FAM161BQ96MY7 647 aa6.59□□□□□ -1.36
CCDC39-205ENST00000485055 SPC25Q9HBM1 224 aa6.59□□□□□ -1.36
CCDC39-205ENST00000485055 MAFBQ9Y5Q3 323 aaPredicted RBP6.59□□□□□ -1.36
CCDC39-205ENST00000485055 GPR37L1O60883 481 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 ZNF280DQ6N043 979 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 METTL16Q86W50 562 aaKnown RBP6.58□□□□□ -1.36
CCDC39-205ENST00000485055 SETDB2Q96T68 719 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 ACBD3Q9H3P7 528 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 ARHGEF10LQ9HCE6 1279 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 KLF15Q9UIH9 416 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 KDM2BQ8NHM5 1336 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 A0A0G2JLW4 131 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 MSH5O43196 834 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 TOMM70O94826 608 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 ALDH1B1P30837 517 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 MMP14P50281 582 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 ST5P78524 1137 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 ZNF746Q6NUN9 644 aaPredicted RBP6.58□□□□□ -1.36
CCDC39-205ENST00000485055 TRIM34Q9BYJ4 488 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 DDX21Q9NR30 783 aaKnown RBP eCLIP6.58□□□□□ -1.36
CCDC39-205ENST00000485055 CDHR2Q9BYE9 1310 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 ARAP2Q8WZ64 1704 aa6.58□□□□□ -1.36
CCDC39-205ENST00000485055 NTSR2O95665 410 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 A1BGP04217 495 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 TPTE2Q6XPS3 522 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 RTKN2Q8IZC4 609 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 JMYQ8N9B5 988 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 IL17RAQ96F46 866 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 MPHOSPH6Q99547 160 aaKnown RBP6.57□□□□□ -1.36
CCDC39-205ENST00000485055 PCDHB8Q9UN66 801 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 TTF2Q9UNY4 1162 aaKnown RBP6.57□□□□□ -1.36
CCDC39-205ENST00000485055 PCDHB13Q9Y5F0 798 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 MAPK8IP3Q9UPT6 1336 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 ECM29Q5VYK3 1845 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 TAF1P21675 1872 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 GLTPD2A6NH11 291 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 ANP32CO43423 234 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 USP5P45974 858 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 CBLBQ13191 982 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 MCM10Q7L590 875 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 C2CD5Q86YS7 1000 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 CCAR1Q8IX12 1150 aaKnown RBP6.57□□□□□ -1.36
CCDC39-205ENST00000485055 EFCAB3Q8N7B9 438 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 CXorf38Q8TB03 319 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 ISCA1Q9BUE6 129 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 SFMBT1Q9UHJ3 866 aa6.57□□□□□ -1.36
CCDC39-205ENST00000485055 NFKBIEO00221 500 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 DHX16O60231 1041 aaKnown RBP6.56□□□□□ -1.36
CCDC39-205ENST00000485055 HSPA6P17066 643 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 LIG1P18858 919 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 PRELPP51888 382 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 FKBP4Q02790 459 aaKnown RBP eCLIP6.56□□□□□ -1.36
CCDC39-205ENST00000485055 SLFNL1Q499Z3 407 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 RNF187Q5TA31 235 aaPredicted RBP6.56□□□□□ -1.36
CCDC39-205ENST00000485055 B4GALNT3Q6L9W6 998 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 TBC1D9Q6ZT07 1266 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 CACTIN-AS1Q8N1I8 211 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 PRR7Q8TB68 274 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 GPCPD1Q9NPB8 672 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 SCAMP3O14828 347 aaKnown RBP6.56□□□□□ -1.36
CCDC39-205ENST00000485055 CNBD1Q8NA66 436 aa6.56□□□□□ -1.36
CCDC39-205ENST00000485055 ZNF512BQ96KM6 892 aaPredicted RBP6.56□□□□□ -1.36
CCDC39-205ENST00000485055 FZD9O00144 591 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 RIPK4P57078 832 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 SF3B3Q15393 1217 aaKnown RBP6.55□□□□□ -1.36
CCDC39-205ENST00000485055 CCDC96Q2M329 555 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 ZKSCAN2Q63HK3 967 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 PLBD2Q8NHP8 589 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 CCDC85AQ96PX6 553 aaPredicted RBP6.55□□□□□ -1.36
CCDC39-205ENST00000485055 HYPKQ9NX55 129 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 GNAI1P63096 354 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 MRPL58Q14197 206 aaKnown RBP6.55□□□□□ -1.36
CCDC39-205ENST00000485055 TMEM259Q4ZIN3 620 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 SMIM5Q71RC9 77 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 PPP1R42Q7Z4L9 355 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 WDR63Q8IWG1 891 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 ALG2Q9H553 416 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 ANO2Q9NQ90 1003 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 PGAP2Q9UHJ9 254 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 TCEAL9Q9UHQ7 104 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 UBN2Q6ZU65 1347 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 POTECB2RU33 542 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 PRC1O43663 620 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 AMPD3Q01432 767 aa6.55□□□□□ -1.36
CCDC39-205ENST00000485055 TCIRG1Q13488 830 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms