RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 PHACTR2O75167 634 aa6.44□□□□□ -1.38
VPS50-216ENST00000484954 WNT11O96014 354 aa6.44□□□□□ -1.38
VPS50-216ENST00000484954 POLR3DP05423 398 aaPredicted RBP6.44□□□□□ -1.38
VPS50-216ENST00000484954 CDC27P30260 824 aa6.44□□□□□ -1.38
VPS50-216ENST00000484954 INTS5Q6P9B9 1019 aaKnown RBP6.44□□□□□ -1.38
VPS50-216ENST00000484954 GLYCTKQ8IVS8 523 aa6.44□□□□□ -1.38
VPS50-216ENST00000484954 TTC16Q8NEE8 873 aa6.44□□□□□ -1.38
VPS50-216ENST00000484954 ADGRE2Q9UHX3 823 aa6.44□□□□□ -1.38
VPS50-216ENST00000484954 DHX15O43143 795 aaKnown RBP6.43□□□□□ -1.38
VPS50-216ENST00000484954 WISP1O95388 367 aa6.43□□□□□ -1.38
VPS50-216ENST00000484954 NFIAQ12857 509 aa6.43□□□□□ -1.38
VPS50-216ENST00000484954 PEAR1Q5VY43 1037 aaPredicted RBP6.43□□□□□ -1.38
VPS50-216ENST00000484954 ARMC10Q8N2F6 343 aa6.43□□□□□ -1.38
VPS50-216ENST00000484954 SNX29Q8TEQ0 813 aa6.43□□□□□ -1.38
VPS50-216ENST00000484954 ZKSCAN3Q9BRR0 538 aa6.43□□□□□ -1.38
VPS50-216ENST00000484954 PDE2AO00408 941 aaPredicted RBP6.42□□□□□ -1.38
VPS50-216ENST00000484954 DDX3YO15523 660 aaKnown RBP6.42□□□□□ -1.38
VPS50-216ENST00000484954 PTPRAP18433 802 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 USP5P45974 858 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 USPL1Q5W0Q7 1092 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 HGSNATQ68CP4 663 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 OGFOD2Q6N063 350 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.42□□□□□ -1.38
VPS50-216ENST00000484954 DTX1Q86Y01 620 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 TRIM42Q8IWZ5 723 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 OSMRQ99650 979 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 ADAM19Q9H013 955 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 C7orf69Q9H7B7 122 aa6.42□□□□□ -1.38
VPS50-216ENST00000484954 HMX2A2RU54 273 aa6.41□□□□□ -1.38
VPS50-216ENST00000484954 PRR19A6NJB7 356 aa6.41□□□□□ -1.38
VPS50-216ENST00000484954 ADAM11O75078 769 aa6.41□□□□□ -1.38
VPS50-216ENST00000484954 UTP4Q969X6 686 aaKnown RBP6.41□□□□□ -1.38
VPS50-216ENST00000484954 ZFYVE28Q9HCC9 887 aa6.41□□□□□ -1.38
VPS50-216ENST00000484954 METTL12A8MUP2 240 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 FSCN2O14926 492 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 IGHA2P01877 340 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 EHHADHQ08426 723 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 ORC1Q13415 861 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 CACTIN-AS1Q8N1I8 211 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 FOXD4L4Q8WXT5 416 aaPredicted RBP6.4□□□□□ -1.38
VPS50-216ENST00000484954 NXPE3Q969Y0 559 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 KLHDC7BQ96G42 594 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 MUC3BQ9H195 1237 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 BRPF3Q9ULD4 1205 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 SOX13Q9UN79 622 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 AMOTL2Q9Y2J4 779 aa6.4□□□□□ -1.38
VPS50-216ENST00000484954 CD68P34810 354 aaPredicted RBP6.39□□□□□ -1.39
VPS50-216ENST00000484954 RNF43Q68DV7 783 aa6.39□□□□□ -1.39
VPS50-216ENST00000484954 ACAD11Q709F0 780 aa6.39□□□□□ -1.39
VPS50-216ENST00000484954 MAP4K3Q8IVH8 894 aa6.39□□□□□ -1.39
VPS50-216ENST00000484954 TMEM102Q8N9M5 508 aaPredicted RBP6.39□□□□□ -1.39
VPS50-216ENST00000484954 UBASH3BQ8TF42 649 aa6.39□□□□□ -1.39
VPS50-216ENST00000484954 PMEPA1Q969W9 287 aa6.39□□□□□ -1.39
VPS50-216ENST00000484954 DBNDD2Q9BQY9 259 aa6.39□□□□□ -1.39
VPS50-216ENST00000484954 SRA1Q9HD15 236 aaKnown RBP6.39□□□□□ -1.39
VPS50-216ENST00000484954 SOWAHDA6NJG2 315 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 H3BRJ5 948 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 GPR182O15218 404 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 C8AP07357 584 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 EDN3P14138 238 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 VN1R5Q7Z5H4 357 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 ABI1Q8IZP0 508 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 SHKBP1Q8TBC3 707 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 FAM129BQ96TA1 746 aa6.38□□□□□ -1.39
VPS50-216ENST00000484954 NDUFB5O43674 189 aa6.37□□□□□ -1.39
VPS50-216ENST00000484954 KIAA1211Q6ZU35 1233 aa6.37□□□□□ -1.39
VPS50-216ENST00000484954 ASAP3Q8TDY4 903 aa6.37□□□□□ -1.39
VPS50-216ENST00000484954 SLC7A3Q8WY07 619 aa6.37□□□□□ -1.39
VPS50-216ENST00000484954 CEP41Q9BYV8 373 aa6.37□□□□□ -1.39
VPS50-216ENST00000484954 SEC31BQ9NQW1 1179 aa6.37□□□□□ -1.39
VPS50-216ENST00000484954 A0A1W2PP55 124 aa6.36□□□□□ -1.39
VPS50-216ENST00000484954 SOX1O00570 391 aaPredicted RBP6.36□□□□□ -1.39
VPS50-216ENST00000484954 HOXA10P31260 410 aaPredicted RBP6.36□□□□□ -1.39
VPS50-216ENST00000484954 NLRP12P59046 1061 aa6.36□□□□□ -1.39
VPS50-216ENST00000484954 GALNT12Q8IXK2 581 aa6.36□□□□□ -1.39
VPS50-216ENST00000484954 CCER1Q8TC90 406 aaPredicted RBP6.36□□□□□ -1.39
VPS50-216ENST00000484954 DCAF11Q8TEB1 546 aa6.36□□□□□ -1.39
VPS50-216ENST00000484954 BHLHE41Q9C0J9 482 aaPredicted RBP6.36□□□□□ -1.39
VPS50-216ENST00000484954 GNEQ9Y223 722 aaKnown RBP6.36□□□□□ -1.39
VPS50-216ENST00000484954 WDR64B1ANS9 1081 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 BRD1O95696 1058 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 CABP4P57796 275 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 PIP4K2BP78356 416 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 PDE4CQ08493 712 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 SPRED3Q2MJR0 410 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 FAM117BQ6P1L5 589 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 KLHL23Q8NBE8 558 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 BSNDQ8WZ55 320 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 TCF12Q99081 682 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 NIF3L1Q9GZT8 377 aa6.35□□□□□ -1.39
VPS50-216ENST00000484954 GRIA4P48058 902 aa6.34□□□□□ -1.39
VPS50-216ENST00000484954 DUOXA2Q1HG44 320 aa6.34□□□□□ -1.39
VPS50-216ENST00000484954 FAM46AQ96IP4 442 aaKnown RBP6.34□□□□□ -1.39
VPS50-216ENST00000484954 MYRFLQ96LU7 910 aa6.34□□□□□ -1.39
VPS50-216ENST00000484954 KCNF1Q9H3M0 494 aa6.34□□□□□ -1.39
VPS50-216ENST00000484954 NPHS2Q9NP85 383 aa6.34□□□□□ -1.39
VPS50-216ENST00000484954 FAM177BA6PVY3 158 aa6.33□□□□□ -1.4
VPS50-216ENST00000484954 IKBKEQ14164 716 aa6.33□□□□□ -1.4
VPS50-216ENST00000484954 LCE5AQ5TCM9 118 aa6.33□□□□□ -1.4
VPS50-216ENST00000484954 CCNJLQ8IV13 435 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms