RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 PIH1D3Q9NQM4 214 aaKnown RBP10.02□□□□□ -0.81
USP4-210ENST00000483212 SNRKQ9NRH2 765 aa10.02□□□□□ -0.81
USP4-210ENST00000483212 AK9Q5TCS8 1911 aa10.01□□□□□ -0.81
USP4-210ENST00000483212 C21orf2O43822 256 aa10.01□□□□□ -0.81
USP4-210ENST00000483212 CHGBP05060 677 aa10.01□□□□□ -0.81
USP4-210ENST00000483212 DPP8Q6V1X1 898 aaPredicted RBP10.01□□□□□ -0.81
USP4-210ENST00000483212 NLGN2Q8NFZ4 835 aa10.01□□□□□ -0.81
USP4-210ENST00000483212 TDRD7Q8NHU6 1098 aaKnown RBP10.01□□□□□ -0.81
USP4-210ENST00000483212 ESYT1Q9BSJ8 1104 aa10.01□□□□□ -0.81
USP4-210ENST00000483212 PIM2Q9P1W9 311 aa10.01□□□□□ -0.81
USP4-210ENST00000483212 IL1R1P14778 569 aa10□□□□□ -0.81
USP4-210ENST00000483212 FKBP4Q02790 459 aaKnown RBP eCLIP10□□□□□ -0.81
USP4-210ENST00000483212 CCDC93Q567U6 631 aa10□□□□□ -0.81
USP4-210ENST00000483212 REM2Q8IYK8 340 aaPredicted RBP10□□□□□ -0.81
USP4-210ENST00000483212 FSD1Q9BTV5 496 aa10□□□□□ -0.81
USP4-210ENST00000483212 CD209Q9NNX6 404 aa10□□□□□ -0.81
USP4-210ENST00000483212 DENND2AQ9ULE3 1009 aa10□□□□□ -0.81
USP4-210ENST00000483212 IQSEC3Q9UPP2 1182 aaPredicted RBP10□□□□□ -0.81
USP4-210ENST00000483212 ZNF646O15015 1829 aaPredicted RBP10□□□□□ -0.81
USP4-210ENST00000483212 COL4A5P29400 1685 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 A0A0D9SFI3 127 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 C6orf229H3BNL8 230 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 SGSM2O43147 1006 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 NMIQ13287 307 aaPredicted RBP9.99□□□□□ -0.81
USP4-210ENST00000483212 TTF1Q15361 905 aaPredicted RBP9.99□□□□□ -0.81
USP4-210ENST00000483212 GRIPAP1Q4V328 841 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 ZNF804AQ7Z570 1209 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 FAM227BQ96M60 508 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 PSMD1Q99460 953 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 GNL3LQ9NVN8 582 aaKnown RBP9.99□□□□□ -0.81
USP4-210ENST00000483212 SALL1Q9NSC2 1324 aa9.99□□□□□ -0.81
USP4-210ENST00000483212 TCRBV5S4A2TA0A5A2 114 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 HIP1O00291 1037 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 SOCS7O14512 581 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 KIAA2012Q0VF49 1180 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 SLFNL1Q499Z3 407 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 DALRD3Q5D0E6 543 aaKnown RBP9.98□□□□□ -0.81
USP4-210ENST00000483212 ZMYM1Q5SVZ6 1142 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 VPS37DQ86XT2 251 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 RTKN2Q8IZC4 609 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 EYA3Q99504 573 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 FHDC1Q9C0D6 1143 aaPredicted RBP9.98□□□□□ -0.81
USP4-210ENST00000483212 COA1Q9GZY4 146 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 TMX4Q9H1E5 349 aaPredicted RBP9.98□□□□□ -0.81
USP4-210ENST00000483212 PPP1R1BQ9UD71 204 aaPredicted RBP9.98□□□□□ -0.81
USP4-210ENST00000483212 FAM205AQ6ZU69 1335 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 RAD50Q92878 1312 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 MAST2Q6P0Q8 1798 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 ARFGEF1Q9Y6D6 1849 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 FER1L6Q2WGJ9 1857 aa9.98□□□□□ -0.81
USP4-210ENST00000483212 MYO5AQ9Y4I1 1855 aaKnown RBP9.98□□□□□ -0.81
USP4-210ENST00000483212 MYH13Q9UKX3 1938 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 RIMBP2O15034 1052 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 RNF113AO15541 343 aaKnown RBP9.97□□□□□ -0.81
USP4-210ENST00000483212 ADD2P35612 726 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 MFAP1P55081 439 aaKnown RBP9.97□□□□□ -0.81
USP4-210ENST00000483212 WASHC4Q2M389 1173 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 SOGA3Q5TF21 947 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 CASC1Q6TDU7 716 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 CWC27Q6UX04 472 aaKnown RBP9.97□□□□□ -0.81
USP4-210ENST00000483212 KLHL34Q8N239 644 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 SUPT20HQ8NEM7 779 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 ZNF384Q8TF68 577 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 ZC3H12CQ9C0D7 883 aaKnown RBP9.97□□□□□ -0.81
USP4-210ENST00000483212 DIAPH3Q9NSV4 1193 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 WWC3Q9ULE0 1092 aa9.97□□□□□ -0.81
USP4-210ENST00000483212 GOLGB1Q14789 3259 aaKnown RBP9.97□□□□□ -0.81
USP4-210ENST00000483212 MYH7P12883 1935 aa9.96□□□□□ -0.81
USP4-210ENST00000483212 CHD4Q14839 1912 aa9.96□□□□□ -0.81
USP4-210ENST00000483212 NFKBIEO00221 500 aa9.96□□□□□ -0.82
USP4-210ENST00000483212 ZFYP08048 801 aaPredicted RBP9.96□□□□□ -0.82
USP4-210ENST00000483212 PDE6AP16499 860 aa9.96□□□□□ -0.82
USP4-210ENST00000483212 UBE3CQ15386 1083 aa9.96□□□□□ -0.82
USP4-210ENST00000483212 ZNF589Q86UQ0 364 aaPredicted RBP9.96□□□□□ -0.82
USP4-210ENST00000483212 APPBP2Q92624 585 aa9.96□□□□□ -0.82
USP4-210ENST00000483212 OSBP2Q969R2 916 aa9.96□□□□□ -0.82
USP4-210ENST00000483212 SEC62Q99442 399 aaKnown RBP9.96□□□□□ -0.82
USP4-210ENST00000483212 LSG1Q9H089 658 aaKnown RBP9.96□□□□□ -0.82
USP4-210ENST00000483212 HELLSQ9NRZ9 838 aa9.96□□□□□ -0.82
USP4-210ENST00000483212 MAST3O60307 1309 aa9.96□□□□□ -0.82
USP4-210ENST00000483212 LTBP3Q9NS15 1303 aa9.96□□□□□ -0.82
USP4-210ENST00000483212 M0R2C6 588 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 EPB41L2O43491 1005 aaKnown RBP9.95□□□□□ -0.82
USP4-210ENST00000483212 IGSF3O75054 1194 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 IDH1O75874 414 aaKnown RBP9.95□□□□□ -0.82
USP4-210ENST00000483212 POTEIP0CG38 1075 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 PRDX5P30044 214 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 RBM25P49756 843 aaKnown RBP9.95□□□□□ -0.82
USP4-210ENST00000483212 CHAF1AQ13111 956 aaPredicted RBP9.95□□□□□ -0.82
USP4-210ENST00000483212 GRIK5Q16478 980 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 AOC3Q16853 763 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 DOK7Q18PE1 504 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 MCMDC2Q4G0Z9 681 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 SLC9C2Q5TAH2 1124 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 WDR66Q8TBY9 1149 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 RUFY2Q8WXA3 655 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 TBC1D32Q96NH3 1257 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 SYT17Q9BSW7 474 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 USP26Q9BXU7 913 aa9.95□□□□□ -0.82
USP4-210ENST00000483212 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms