RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 NR3C2P08235 984 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 CANXP27824 592 aaKnown RBP8.48□□□□□ -1.05
USP48-208ENST00000479177 PTK2Q05397 1052 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 SCARF1Q14162 830 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 C20orf194Q5TEA3 1177 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 CCDC30Q5VVM6 783 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 ZKSCAN2Q63HK3 967 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 ZBTB33Q86T24 672 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 FRAT1Q92837 279 aaPredicted RBP8.48□□□□□ -1.05
USP48-208ENST00000479177 SYTL4Q96C24 671 aaPredicted RBP8.48□□□□□ -1.05
USP48-208ENST00000479177 TNNQ9UQP3 1299 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 NDUFB9Q9Y6M9 179 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 RREB1Q92766 1687 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 EP400Q96L91 3159 aa8.48□□□□□ -1.05
USP48-208ENST00000479177 COL5A3P25940 1745 aaPredicted RBP8.47□□□□□ -1.05
USP48-208ENST00000479177 SOCS7O14512 581 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 KCNQ2O43526 872 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 ADH1CP00326 375 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 SNRPA1P09661 255 aaKnown RBP8.47□□□□□ -1.05
USP48-208ENST00000479177 TRIM27P14373 513 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 PDE3AQ14432 1141 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 POTEAQ6S8J7 498 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 ATF7IPQ6VMQ6 1270 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 KRT27Q7Z3Y8 459 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 STK31Q9BXU1 1019 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 CHMP4AQ9BY43 222 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 GDPD2Q9HCC8 539 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 NOB1Q9ULX3 412 aaKnown RBP8.47□□□□□ -1.05
USP48-208ENST00000479177 ABCC4O15439 1325 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 PALLDQ8WX93 1383 aa8.47□□□□□ -1.05
USP48-208ENST00000479177 LY75O60449 1722 aa8.46□□□□□ -1.05
USP48-208ENST00000479177 PXDNLA1KZ92 1463 aa8.46□□□□□ -1.05
USP48-208ENST00000479177 IPO8O15397 1037 aaKnown RBP8.46□□□□□ -1.06
USP48-208ENST00000479177 PTCD1O75127 700 aaKnown RBP8.46□□□□□ -1.06
USP48-208ENST00000479177 RLBP1P12271 317 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 EIF2S2P20042 333 aaKnown RBP8.46□□□□□ -1.06
USP48-208ENST00000479177 RXRBP28702 533 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 FAM182BQ5T319 152 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 ERICH6BQ5W0A0 696 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 VASH1Q7L8A9 365 aaPredicted RBP8.46□□□□□ -1.06
USP48-208ENST00000479177 TRMT44Q8IYL2 757 aaKnown RBP8.46□□□□□ -1.06
USP48-208ENST00000479177 MPNDQ8N594 471 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 PNMA1Q8ND90 353 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 ARHGAP45Q92619 1136 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 POM121Q96HA1 1249 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 CRBNQ96SW2 442 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 ZFAND3Q9H8U3 227 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 CHPF2Q9P2E5 772 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 PTPRCP08575 1304 aa8.46□□□□□ -1.06
USP48-208ENST00000479177 PPFIA3O75145 1194 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 FSHRP23945 695 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 FLIIQ13045 1269 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 IRF5Q13568 498 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 PROSER3Q2NL68 480 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 G2E3Q7L622 706 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 PTF1AQ7RTS3 328 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 PANK1Q8TE04 598 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 SMARCC1Q92922 1105 aaPredicted RBP8.45□□□□□ -1.06
USP48-208ENST00000479177 SLC4A9Q96Q91 983 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 API5Q9BZZ5 524 aaKnown RBP8.45□□□□□ -1.06
USP48-208ENST00000479177 DBF4Q9UBU7 674 aaPredicted RBP8.45□□□□□ -1.06
USP48-208ENST00000479177 GPSM3Q9Y4H4 160 aa8.45□□□□□ -1.06
USP48-208ENST00000479177 TNS1Q9HBL0 1735 aaKnown RBP8.45□□□□□ -1.06
USP48-208ENST00000479177 NUP188Q5SRE5 1749 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 ZBBXA8MT70 800 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 ANXA1P04083 346 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 KRT76Q01546 638 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 C6orf118Q5T5N4 469 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 FAM196AQ6ZSG2 479 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 LRP10Q7Z4F1 713 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 DNAJC10Q8IXB1 793 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 FTSJ3Q8IY81 847 aaKnown RBP8.44□□□□□ -1.06
USP48-208ENST00000479177 DZIP1LQ8IYY4 767 aaKnown RBP8.44□□□□□ -1.06
USP48-208ENST00000479177 EXOC6Q8TAG9 804 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 CLUAP1Q96AJ1 413 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 SLC10A4Q96EP9 437 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 DDX21Q9NR30 783 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP48-208ENST00000479177 USP16Q9Y5T5 823 aa8.44□□□□□ -1.06
USP48-208ENST00000479177 MYH14Q7Z406 1995 aaKnown RBP8.44□□□□□ -1.06
USP48-208ENST00000479177 ARFGEF2Q9Y6D5 1785 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 TAF1LQ8IZX4 1826 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 LOC102724428A0A0B4J2F2 783 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 ABL2P42684 1182 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 SIK1P57059 783 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 RASSF7Q02833 373 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 MVPQ14764 893 aaKnown RBP8.43□□□□□ -1.06
USP48-208ENST00000479177 GPR161Q8N6U8 529 aaKnown RBP8.43□□□□□ -1.06
USP48-208ENST00000479177 PHAXQ9H814 394 aaKnown RBP8.43□□□□□ -1.06
USP48-208ENST00000479177 HYPKQ9NX55 129 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 COG6Q9Y2V7 657 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 ADCY9O60503 1353 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 RGPD3A6NKT7 1758 aaPredicted RBP8.43□□□□□ -1.06
USP48-208ENST00000479177 RGPD4Q7Z3J3 1758 aa8.43□□□□□ -1.06
USP48-208ENST00000479177 FKBP5Q13451 457 aaPredicted RBP8.42□□□□□ -1.06
USP48-208ENST00000479177 ITPK1Q13572 414 aa8.42□□□□□ -1.06
USP48-208ENST00000479177 NBPF10Q6P3W6 841 aaKnown RBP8.42□□□□□ -1.06
USP48-208ENST00000479177 TMEM151AQ8N4L1 468 aa8.42□□□□□ -1.06
USP48-208ENST00000479177 TMEM57Q8N5G2 664 aa8.42□□□□□ -1.06
USP48-208ENST00000479177 NBPF15Q8N660 670 aa8.42□□□□□ -1.06
USP48-208ENST00000479177 ITPKCQ96DU7 683 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms