RNA–Protein interactions for RNA: ENST00000479168.5

LIMS3-202, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 2

Gene LIMS3, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-202ENST00000479168 CHADLQ6NUI6 762 aa18.02■□□□□ 0.48
LIMS3-202ENST00000479168 WDR66Q8TBY9 1149 aa18.02■□□□□ 0.48
LIMS3-202ENST00000479168 KIF1BPQ96EK5 621 aa18.02■□□□□ 0.48
LIMS3-202ENST00000479168 GMLQ99445 158 aa18.02■□□□□ 0.48
LIMS3-202ENST00000479168 DENND2AQ9ULE3 1009 aa18.02■□□□□ 0.48
LIMS3-202ENST00000479168 MAST3O60307 1309 aa18.01■□□□□ 0.47
LIMS3-202ENST00000479168 PDS5AQ29RF7 1337 aaKnown RBP18.01■□□□□ 0.47
LIMS3-202ENST00000479168 KIF4BQ2VIQ3 1234 aa18.01■□□□□ 0.47
LIMS3-202ENST00000479168 TNNI3KQ59H18 835 aa18.01■□□□□ 0.47
LIMS3-202ENST00000479168 MFSD14BQ5SR56 506 aa18.01■□□□□ 0.47
LIMS3-202ENST00000479168 ZGPATQ8N5A5 531 aaKnown RBP18.01■□□□□ 0.47
LIMS3-202ENST00000479168 CRBNQ96SW2 442 aa18.01■□□□□ 0.47
LIMS3-202ENST00000479168 FPGT-TNNI3KV9GXZ4 949 aa18.01■□□□□ 0.47
LIMS3-202ENST00000479168 CCDC102BQ68D86 513 aa18■□□□□ 0.47
LIMS3-202ENST00000479168 CLASRPQ8N2M8 674 aaKnown RBP18■□□□□ 0.47
LIMS3-202ENST00000479168 XAGE2Q96GT9 111 aa18■□□□□ 0.47
LIMS3-202ENST00000479168 NEUROD6Q96NK8 337 aa18■□□□□ 0.47
LIMS3-202ENST00000479168 CLEC11AQ9Y240 323 aa18■□□□□ 0.47
LIMS3-202ENST00000479168 EXOC6BQ9Y2D4 811 aa18■□□□□ 0.47
LIMS3-202ENST00000479168 SUPT16HQ9Y5B9 1047 aaKnown RBP18■□□□□ 0.47
LIMS3-202ENST00000479168 UQCRFS1P1P0C7P4 283 aa17.99■□□□□ 0.47
LIMS3-202ENST00000479168 CCDC158Q5M9N0 1113 aa17.99■□□□□ 0.47
LIMS3-202ENST00000479168 SIRT2Q8IXJ6 389 aa17.99■□□□□ 0.47
LIMS3-202ENST00000479168 MYOZ2Q9NPC6 264 aa17.99■□□□□ 0.47
LIMS3-202ENST00000479168 TIMM10P62072 90 aa17.98■□□□□ 0.47
LIMS3-202ENST00000479168 CHAF1AQ13111 956 aaPredicted RBP17.98■□□□□ 0.47
LIMS3-202ENST00000479168 KIAA0825Q8IV33 1275 aa17.98■□□□□ 0.47
LIMS3-202ENST00000479168 RHPN1Q8TCX5 695 aa17.98■□□□□ 0.47
LIMS3-202ENST00000479168 PSME4Q14997 1843 aa17.98■□□□□ 0.47
LIMS3-202ENST00000479168 SCN9AQ15858 1988 aa17.97■□□□□ 0.47
LIMS3-202ENST00000479168 PHKA1P46020 1223 aa17.97■□□□□ 0.47
LIMS3-202ENST00000479168 TBC1D10BQ4KMP7 808 aaPredicted RBP17.97■□□□□ 0.47
LIMS3-202ENST00000479168 TRPM4Q8TD43 1214 aa17.97■□□□□ 0.47
LIMS3-202ENST00000479168 SALL1Q9NSC2 1324 aa17.97■□□□□ 0.47
LIMS3-202ENST00000479168 ARAP2Q8WZ64 1704 aa17.96■□□□□ 0.47
LIMS3-202ENST00000479168 MYO1BO43795 1136 aa17.96■□□□□ 0.47
LIMS3-202ENST00000479168 IGSF3O75054 1194 aa17.96■□□□□ 0.47
LIMS3-202ENST00000479168 ADORA1P30542 326 aa17.96■□□□□ 0.47
LIMS3-202ENST00000479168 DCPSQ96C86 337 aaKnown RBP17.96■□□□□ 0.47
LIMS3-202ENST00000479168 ZNF512BQ96KM6 892 aaPredicted RBP17.96■□□□□ 0.47
LIMS3-202ENST00000479168 LRRCC1Q9C099 1032 aa17.96■□□□□ 0.47
LIMS3-202ENST00000479168 PGAP2Q9UHJ9 254 aa17.96■□□□□ 0.47
LIMS3-202ENST00000479168 SERPINA10Q9UK55 444 aa17.96■□□□□ 0.47
LIMS3-202ENST00000479168 IQSEC3Q9UPP2 1182 aaPredicted RBP17.96■□□□□ 0.47
LIMS3-202ENST00000479168 PITPNM2Q9BZ72 1349 aa17.96■□□□□ 0.46
LIMS3-202ENST00000479168 ARID4AP29374 1257 aaPredicted RBP17.95■□□□□ 0.46
LIMS3-202ENST00000479168 HDLBPQ00341 1268 aaKnown RBP17.95■□□□□ 0.46
LIMS3-202ENST00000479168 DLGAP5Q15398 846 aa17.95■□□□□ 0.46
LIMS3-202ENST00000479168 TTC39AQ5SRH9 613 aa17.95■□□□□ 0.46
LIMS3-202ENST00000479168 SPTY2D1Q68D10 685 aaPredicted RBP17.95■□□□□ 0.46
LIMS3-202ENST00000479168 SAMD7Q7Z3H4 446 aa17.95■□□□□ 0.46
LIMS3-202ENST00000479168 AACSQ86V21 672 aa17.95■□□□□ 0.46
LIMS3-202ENST00000479168 CERS5Q8N5B7 392 aa17.95■□□□□ 0.46
LIMS3-202ENST00000479168 MTMR14Q8NCE2 650 aa17.95■□□□□ 0.46
LIMS3-202ENST00000479168 ZBTB47Q9UFB7 747 aaPredicted RBP17.95■□□□□ 0.46
LIMS3-202ENST00000479168 IFIT2P09913 472 aaKnown RBP17.94■□□□□ 0.46
LIMS3-202ENST00000479168 POTEIP0CG38 1075 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 POTEJP0CG39 1038 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 RASGRF1Q13972 1273 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 CDC37L1Q7L3B6 337 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 SULF1Q8IWU6 871 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 CNTROBQ8N137 903 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 MXD3Q9BW11 206 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 TTF2Q9UNY4 1162 aaKnown RBP17.94■□□□□ 0.46
LIMS3-202ENST00000479168 JAG2Q9Y219 1238 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 ADAMTSL1Q8N6G6 1762 aa17.94■□□□□ 0.46
LIMS3-202ENST00000479168 HDAC1Q13547 482 aaPredicted RBP17.93■□□□□ 0.46
LIMS3-202ENST00000479168 RBM26Q5T8P6 1007 aaKnown RBP17.93■□□□□ 0.46
LIMS3-202ENST00000479168 SLF2Q8IX21 1173 aa17.93■□□□□ 0.46
LIMS3-202ENST00000479168 TEKT1Q969V4 418 aa17.93■□□□□ 0.46
LIMS3-202ENST00000479168 MRIQ9BWK5 157 aa17.93■□□□□ 0.46
LIMS3-202ENST00000479168 DCTPP1Q9H773 170 aa17.93■□□□□ 0.46
LIMS3-202ENST00000479168 GGA3Q9NZ52 723 aa17.93■□□□□ 0.46
LIMS3-202ENST00000479168 SHTN1A0MZ66 631 aa17.92■□□□□ 0.46
LIMS3-202ENST00000479168 F8W031 263 aaPredicted RBP17.92■□□□□ 0.46
LIMS3-202ENST00000479168 LDHBP07195 334 aaKnown RBP17.92■□□□□ 0.46
LIMS3-202ENST00000479168 HSPA6P17066 643 aa17.92■□□□□ 0.46
LIMS3-202ENST00000479168 APLP1P51693 650 aa17.92■□□□□ 0.46
LIMS3-202ENST00000479168 MAP1SQ66K74 1059 aaPredicted RBP17.92■□□□□ 0.46
LIMS3-202ENST00000479168 APOBEC3FQ8IUX4 373 aaKnown RBP17.92■□□□□ 0.46
LIMS3-202ENST00000479168 SPATA5Q8NB90 893 aa17.92■□□□□ 0.46
LIMS3-202ENST00000479168 EAF2Q96CJ1 260 aaPredicted RBP17.92■□□□□ 0.46
LIMS3-202ENST00000479168 GPATCH3Q96I76 525 aa17.92■□□□□ 0.46
LIMS3-202ENST00000479168 DBNDD2Q9BQY9 259 aa17.92■□□□□ 0.46
LIMS3-202ENST00000479168 DBNLQ9UJU6 430 aaKnown RBP17.92■□□□□ 0.46
LIMS3-202ENST00000479168 PCDHB15Q9Y5E8 787 aa17.92■□□□□ 0.46
LIMS3-202ENST00000479168 COL1A1P02452 1464 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-202ENST00000479168 APBB1O00213 710 aa17.91■□□□□ 0.46
LIMS3-202ENST00000479168 WNT10BO00744 389 aa17.91■□□□□ 0.46
LIMS3-202ENST00000479168 CENPBP07199 599 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-202ENST00000479168 RBM5P52756 815 aaKnown RBP eCLIP17.91■□□□□ 0.46
LIMS3-202ENST00000479168 HIRAP54198 1017 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-202ENST00000479168 SCARF1Q14162 830 aa17.91■□□□□ 0.46
LIMS3-202ENST00000479168 KRT26Q7Z3Y9 468 aa17.91■□□□□ 0.46
LIMS3-202ENST00000479168 GCC1Q96CN9 775 aa17.91■□□□□ 0.46
LIMS3-202ENST00000479168 RWDD1Q9H446 243 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-202ENST00000479168 IL1RAPL2Q9NP60 686 aa17.91■□□□□ 0.46
LIMS3-202ENST00000479168 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-202ENST00000479168 SPDYE2BA6NHP3 402 aa17.9■□□□□ 0.46
LIMS3-202ENST00000479168 SPDYE6P0CI01 402 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms