RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 FRAT2O75474 233 aaPredicted RBP9.47□□□□□ -0.89
VMA21-203ENST00000477649 HCLS1P14317 486 aaPredicted RBP9.47□□□□□ -0.89
VMA21-203ENST00000477649 CASTP20810 708 aaKnown RBP9.47□□□□□ -0.89
VMA21-203ENST00000477649 RBM6P78332 1123 aaKnown RBP9.47□□□□□ -0.89
VMA21-203ENST00000477649 FKBP4Q02790 459 aaKnown RBP eCLIP9.47□□□□□ -0.89
VMA21-203ENST00000477649 UBE4AQ14139 1066 aa9.47□□□□□ -0.89
VMA21-203ENST00000477649 BLOC1S2Q6QNY1 142 aa9.47□□□□□ -0.89
VMA21-203ENST00000477649 NBPF5PQ86XG9 351 aaPredicted RBP9.47□□□□□ -0.89
VMA21-203ENST00000477649 RASEFQ8IZ41 740 aa9.47□□□□□ -0.89
VMA21-203ENST00000477649 SYNE4Q8N205 404 aa9.47□□□□□ -0.89
VMA21-203ENST00000477649 JAKMIP1Q96N16 626 aaKnown RBP9.47□□□□□ -0.89
VMA21-203ENST00000477649 ANKRD2Q9GZV1 360 aa9.47□□□□□ -0.89
VMA21-203ENST00000477649 CYP2E1P05181 493 aaPredicted RBP9.46□□□□□ -0.9
VMA21-203ENST00000477649 MAP3K12Q12852 859 aa9.46□□□□□ -0.9
VMA21-203ENST00000477649 CCDC102BQ68D86 513 aa9.46□□□□□ -0.9
VMA21-203ENST00000477649 SPRYD3Q8NCJ5 442 aa9.46□□□□□ -0.9
VMA21-203ENST00000477649 ARHGEF1Q92888 912 aaKnown RBP9.46□□□□□ -0.9
VMA21-203ENST00000477649 CCDC85AQ96PX6 553 aaPredicted RBP9.46□□□□□ -0.9
VMA21-203ENST00000477649 UPF3BQ9BZI7 483 aaKnown RBP9.46□□□□□ -0.9
VMA21-203ENST00000477649 BCL2L12Q9HB09 334 aa9.46□□□□□ -0.9
VMA21-203ENST00000477649 PDS5AQ29RF7 1337 aaKnown RBP9.46□□□□□ -0.9
VMA21-203ENST00000477649 CARMIL3Q8ND23 1372 aa9.46□□□□□ -0.9
VMA21-203ENST00000477649 FAM205CA6NFA0 338 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 RPS6KB1P23443 525 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 ADORA1P30542 326 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 ZAP70P43403 619 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 AK2P54819 239 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 ERFEQ4G0M1 354 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 TBC1D9BQ66K14 1250 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 ZNF589Q86UQ0 364 aaPredicted RBP9.45□□□□□ -0.9
VMA21-203ENST00000477649 FBXL16Q8N461 479 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 TNPO1Q92973 898 aaKnown RBP9.45□□□□□ -0.9
VMA21-203ENST00000477649 EDC3Q96F86 508 aaKnown RBP9.45□□□□□ -0.9
VMA21-203ENST00000477649 NEK1Q96PY6 1258 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 WDR33Q9C0J8 1336 aaKnown RBP9.45□□□□□ -0.9
VMA21-203ENST00000477649 C4BP0C0L5 1744 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 COL24A1Q17RW2 1714 aa9.45□□□□□ -0.9
VMA21-203ENST00000477649 PLSCR1O15162 318 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 HSPD1P10809 573 aaKnown RBP9.44□□□□□ -0.9
VMA21-203ENST00000477649 GNAT2P19087 354 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 PDCP20941 246 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 ADD2P35612 726 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 MCAMP43121 646 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 RPS8P62241 208 aaKnown RBP9.44□□□□□ -0.9
VMA21-203ENST00000477649 CHRNDQ07001 517 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 IMMTQ16891 758 aaKnown RBP9.44□□□□□ -0.9
VMA21-203ENST00000477649 CAVIN4Q5BKX8 364 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 SPATA5Q8NB90 893 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 FLAD1Q8NFF5 587 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 SEC31BQ9NQW1 1179 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 ISY1Q9ULR0 285 aaKnown RBP9.44□□□□□ -0.9
VMA21-203ENST00000477649 PCDHB13Q9Y5F0 798 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 ATP6V1DQ9Y5K8 247 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 ZNF804BA4D1E1 1349 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 MAST3O60307 1309 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 ZMYM6O95789 1325 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 WDR19Q8NEZ3 1342 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 DDX60Q8IY21 1712 aaKnown RBP9.44□□□□□ -0.9
VMA21-203ENST00000477649 ARAP2Q8WZ64 1704 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 SBF2Q86WG5 1849 aa9.44□□□□□ -0.9
VMA21-203ENST00000477649 FAM177BA6PVY3 158 aa9.43□□□□□ -0.9
VMA21-203ENST00000477649 GSE1Q14687 1217 aa9.43□□□□□ -0.9
VMA21-203ENST00000477649 ALX1Q15699 326 aa9.43□□□□□ -0.9
VMA21-203ENST00000477649 WASHC4Q2M389 1173 aa9.43□□□□□ -0.9
VMA21-203ENST00000477649 DHX32Q7L7V1 743 aaKnown RBP9.43□□□□□ -0.9
VMA21-203ENST00000477649 TMC4Q7Z404 712 aa9.43□□□□□ -0.9
VMA21-203ENST00000477649 DENND2AQ9ULE3 1009 aa9.43□□□□□ -0.9
VMA21-203ENST00000477649 SMC3Q9UQE7 1217 aa9.43□□□□□ -0.9
VMA21-203ENST00000477649 KIF3AQ9Y496 699 aa9.43□□□□□ -0.9
VMA21-203ENST00000477649 NPHP1O15259 732 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 BRD1O95696 1058 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 CYP21A2P08686 494 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 PHKA1P46020 1223 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 NT5C2P49902 561 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 ST5P78524 1137 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 ADCK5Q3MIX3 580 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 SLC9C2Q5TAH2 1124 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 PTF1AQ7RTS3 328 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 KLHL34Q8N239 644 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 CNBD1Q8NA66 436 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 OSBP2Q969R2 916 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 LLPHQ9BRT6 129 aaKnown RBP9.42□□□□□ -0.9
VMA21-203ENST00000477649 MINPP1Q9UNW1 487 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 TAF1LQ8IZX4 1826 aa9.42□□□□□ -0.9
VMA21-203ENST00000477649 PNPLA7Q6ZV29 1317 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.41□□□□□ -0.9
VMA21-203ENST00000477649 GPAA1O43292 621 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 TRAK2O60296 914 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 BAG4O95429 457 aaKnown RBP9.41□□□□□ -0.9
VMA21-203ENST00000477649 PDE6AP16499 860 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 SCARF1Q14162 830 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 CSPP1Q1MSJ5 1256 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 BICDL1Q6ZP65 573 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 ZGPATQ8N5A5 531 aaKnown RBP9.41□□□□□ -0.9
VMA21-203ENST00000477649 RGS22Q8NE09 1264 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 UPF1Q92900 1129 aaKnown RBP eCLIP9.41□□□□□ -0.9
VMA21-203ENST00000477649 RNF166Q96A37 237 aaPredicted RBP9.41□□□□□ -0.9
VMA21-203ENST00000477649 TMEM106CQ9BVX2 250 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 AGXT2Q9BYV1 514 aa9.41□□□□□ -0.9
VMA21-203ENST00000477649 NACAP1Q9BZK3 213 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms