RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 DBNLQ9UJU6 430 aaKnown RBP16.86■□□□□ 0.29
HDAC6-220ENST00000477528 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.86■□□□□ 0.29
HDAC6-220ENST00000477528 MAGEB6P1A0A0J9YX57 407 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 BMP15O95972 392 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 FAM160A1Q05DH4 1040 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 MTX1Q13505 466 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 IFIT1BQ5T764 474 aaKnown RBP16.86■□□□□ 0.29
HDAC6-220ENST00000477528 ISM2Q6H9L7 571 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 SLF2Q8IX21 1173 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 CAGE1Q8TC20 777 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 CLSTN2Q9H4D0 955 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 KAT6BQ8WYB5 2073 aa16.86■□□□□ 0.29
HDAC6-220ENST00000477528 AOPEPQ8N6M6 819 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 CCDC43Q96MW1 224 aaKnown RBP16.85■□□□□ 0.29
HDAC6-220ENST00000477528 SETDB2Q96T68 719 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 PYM1Q9BRP8 204 aaKnown RBP16.85■□□□□ 0.29
HDAC6-220ENST00000477528 TLR7Q9NYK1 1049 aaKnown RBP16.85■□□□□ 0.29
HDAC6-220ENST00000477528 SPATA31D1Q6ZQQ2 1576 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 TMEM87BQ96K49 555 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 KAT14Q9H8E8 782 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 NCOA5Q9HCD5 579 aaKnown RBP16.85■□□□□ 0.29
HDAC6-220ENST00000477528 TRMT1Q9NXH9 659 aaKnown RBP16.85■□□□□ 0.29
HDAC6-220ENST00000477528 MYOM1P52179 1685 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 JAK2O60674 1132 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 ADCK5Q3MIX3 580 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 HSP90B2PQ58FF3 399 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
HDAC6-220ENST00000477528 LUZP1Q86V48 1076 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 E7EWF7 191 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 MBD4O95243 580 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 PPP1R9BQ96SB3 815 aa16.85■□□□□ 0.29
HDAC6-220ENST00000477528 NRKQ7Z2Y5 1582 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 TAF5LO75529 589 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 PDCL3Q9H2J4 239 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 GPR108Q9NPR9 543 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 FBXO3Q9UK99 471 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 ZAP70P43403 619 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 CD163L1Q9NR16 1453 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 DTNBO60941 627 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 BMP2KQ9NSY1 1161 aaPredicted RBP16.84■□□□□ 0.29
HDAC6-220ENST00000477528 ANGEL1Q9UNK9 670 aaKnown RBP16.84■□□□□ 0.29
HDAC6-220ENST00000477528 LPIN2Q92539 896 aa16.84■□□□□ 0.29
HDAC6-220ENST00000477528 RTL9Q8NET4 1388 aa16.83■□□□□ 0.29
HDAC6-220ENST00000477528 MIGA1Q8NAN2 632 aa16.83■□□□□ 0.29
HDAC6-220ENST00000477528 SEC62Q99442 399 aaKnown RBP16.83■□□□□ 0.29
HDAC6-220ENST00000477528 UBXN4Q92575 508 aa16.83■□□□□ 0.28
HDAC6-220ENST00000477528 ERCC4Q92889 916 aaPredicted RBP16.83■□□□□ 0.28
HDAC6-220ENST00000477528 NYXQ9GZU5 481 aa16.83■□□□□ 0.28
HDAC6-220ENST00000477528 PAXBP1Q9Y5B6 917 aa16.83■□□□□ 0.28
HDAC6-220ENST00000477528 PCCAP05165 728 aaPredicted RBP16.82■□□□□ 0.28
HDAC6-220ENST00000477528 REREQ9P2R6 1566 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 SASH1O94885 1247 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 RFC4P35249 363 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 GSTO1P78417 241 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 ARHGAP29Q52LW3 1261 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 AK7Q96M32 723 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 CALM1P0DP23 149 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 CALM2P0DP24 149 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 CALM3P0DP25 149 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 SKILP12757 684 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 CHAMP1Q96JM3 812 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 B4E1Z4 1266 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 RXRAP19793 462 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 RBM5P52756 815 aaKnown RBP eCLIP16.82■□□□□ 0.28
HDAC6-220ENST00000477528 CCDC12Q8WUD4 166 aaPredicted RBP16.82■□□□□ 0.28
HDAC6-220ENST00000477528 KIF2CQ99661 725 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 CARD10Q9BWT7 1032 aa16.82■□□□□ 0.28
HDAC6-220ENST00000477528 MROH5Q6ZUA9 1318 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 LRRC24Q50LG9 513 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 ZBTB38Q8NAP3 1195 aaPredicted RBP16.81■□□□□ 0.28
HDAC6-220ENST00000477528 WDR17Q8IZU2 1322 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 CIAO1O76071 339 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 EIF5P55010 431 aaKnown RBP16.81■□□□□ 0.28
HDAC6-220ENST00000477528 UBASH3AP57075 661 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 CCDC178Q5BJE1 867 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 ZNF274Q96GC6 653 aaPredicted RBP16.81■□□□□ 0.28
HDAC6-220ENST00000477528 RIMBP3CA6NJZ7 1639 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 RIMBP3BA6NNM3 1639 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 RIMBP3Q9UFD9 1639 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 HSPD1P10809 573 aaKnown RBP16.81■□□□□ 0.28
HDAC6-220ENST00000477528 PTGS1P23219 599 aa16.81■□□□□ 0.28
HDAC6-220ENST00000477528 ZSCAN29Q8IWY8 852 aaPredicted RBP16.81■□□□□ 0.28
HDAC6-220ENST00000477528 PFKFB2O60825 505 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 CEP135Q66GS9 1140 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 A0A1B0GVL5 298 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 SNW1Q13573 536 aaKnown RBP16.8■□□□□ 0.28
HDAC6-220ENST00000477528 TRIM75PA6NK02 468 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 PTPN12Q05209 780 aaKnown RBP16.8■□□□□ 0.28
HDAC6-220ENST00000477528 CCDC87Q9NVE4 849 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 AXIN2Q9Y2T1 843 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 CTSWP56202 376 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 TPTE2Q6XPS3 522 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 DEF6Q9H4E7 631 aa16.8■□□□□ 0.28
HDAC6-220ENST00000477528 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.79■□□□□ 0.28
HDAC6-220ENST00000477528 TANGO6Q9C0B7 1094 aa16.79■□□□□ 0.28
HDAC6-220ENST00000477528 SSBP05455 408 aaKnown RBP eCLIP16.79■□□□□ 0.28
HDAC6-220ENST00000477528 ANO1Q5XXA6 986 aa16.79■□□□□ 0.28
HDAC6-220ENST00000477528 TXLNBQ8N3L3 684 aa16.79■□□□□ 0.28
HDAC6-220ENST00000477528 LUC7LQ9NQ29 371 aaKnown RBP16.79■□□□□ 0.28
HDAC6-220ENST00000477528 ADCY9O60503 1353 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms