RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 Q6ZUG5 572 aa14.52□□□□□ -0.09
SYNE1-222ENST00000474655 DDX49Q9Y6V7 483 aaKnown RBP14.52□□□□□ -0.09
SYNE1-222ENST00000474655 IMMTQ16891 758 aaKnown RBP14.51□□□□□ -0.09
SYNE1-222ENST00000474655 BICDL1Q6ZP65 573 aa14.51□□□□□ -0.09
SYNE1-222ENST00000474655 NECAB1Q8N987 351 aa14.51□□□□□ -0.09
SYNE1-222ENST00000474655 GZF1Q9H116 711 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-222ENST00000474655 LRRC4BQ9NT99 713 aa14.51□□□□□ -0.09
SYNE1-222ENST00000474655 A0A0G2JLW4 131 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 ZBTB22O15209 634 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 IDH1O75874 414 aaKnown RBP14.5□□□□□ -0.09
SYNE1-222ENST00000474655 TRAPPC3LQ5T215 181 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 TTLL5Q6EMB2 1281 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 NBPF5PQ86XG9 351 aaPredicted RBP14.5□□□□□ -0.09
SYNE1-222ENST00000474655 GTF3C6Q969F1 213 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 NLRP3Q96P20 1036 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 MINPP1Q9UNW1 487 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 ZMYM6O95789 1325 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 ZNF532Q9HCE3 1301 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 CHD4Q14839 1912 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 PRPF40AO75400 957 aaKnown RBP14.5□□□□□ -0.09
SYNE1-222ENST00000474655 GTF2E1P29083 439 aaPredicted RBP14.5□□□□□ -0.09
SYNE1-222ENST00000474655 BCAMP50895 628 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 EVCP57679 992 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 MAP3K12Q12852 859 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 ALX1Q15699 326 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 L1TD1Q5T7N2 865 aaKnown RBP14.5□□□□□ -0.09
SYNE1-222ENST00000474655 FAM196AQ6ZSG2 479 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 TMEM87AQ8NBN3 555 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 WWC3Q9ULE0 1092 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 MTMR6Q9Y217 621 aa14.5□□□□□ -0.09
SYNE1-222ENST00000474655 TNRC6CQ9HCJ0 1690 aaKnown RBP14.5□□□□□ -0.09
SYNE1-222ENST00000474655 MYH13Q9UKX3 1938 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 PFKFB2O60825 505 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 F13A1P00488 732 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 PDCP20941 246 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 TM4SF1P30408 202 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 RFC4P35249 363 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 SLC27A3Q5K4L6 730 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 FOXD4L5Q5VV16 416 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-222ENST00000474655 FOXD4L4Q8WXT5 416 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-222ENST00000474655 CELF1Q92879 486 aaKnown RBP14.49□□□□□ -0.09
SYNE1-222ENST00000474655 ATP6V1DQ9Y5K8 247 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 WDR19Q8NEZ3 1342 aa14.49□□□□□ -0.09
SYNE1-222ENST00000474655 RPS8P62241 208 aaKnown RBP14.48□□□□□ -0.09
SYNE1-222ENST00000474655 BRF1Q92994 677 aa14.48□□□□□ -0.09
SYNE1-222ENST00000474655 CHAMP1Q96JM3 812 aa14.48□□□□□ -0.09
SYNE1-222ENST00000474655 STRBPQ96SI9 672 aaKnown RBP14.48□□□□□ -0.09
SYNE1-222ENST00000474655 LLPHQ9BRT6 129 aaKnown RBP14.48□□□□□ -0.09
SYNE1-222ENST00000474655 CARMIL3Q8ND23 1372 aa14.48□□□□□ -0.09
SYNE1-222ENST00000474655 GOLGA6L3A6NEY3 463 aa14.47□□□□□ -0.09
SYNE1-222ENST00000474655 GPT2Q8TD30 523 aa14.47□□□□□ -0.09
SYNE1-222ENST00000474655 ZNF274Q96GC6 653 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-222ENST00000474655 CACNA1SQ13698 1873 aa14.47□□□□□ -0.09
SYNE1-222ENST00000474655 ZNF213O14771 459 aa14.47□□□□□ -0.09
SYNE1-222ENST00000474655 MB21D2Q8IYB1 491 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-222ENST00000474655 SMARCC2Q8TAQ2 1214 aa14.47□□□□□ -0.09
SYNE1-222ENST00000474655 PDS5AQ29RF7 1337 aaKnown RBP14.46□□□□□ -0.09
SYNE1-222ENST00000474655 PNPLA7Q6ZV29 1317 aa14.46□□□□□ -0.09
SYNE1-222ENST00000474655 MBD3O95983 291 aa14.46□□□□□ -0.09
SYNE1-222ENST00000474655 LARP1BQ659C4 914 aaKnown RBP14.46□□□□□ -0.09
SYNE1-222ENST00000474655 KRT27Q7Z3Y8 459 aa14.46□□□□□ -0.09
SYNE1-222ENST00000474655 GNL3LQ9NVN8 582 aaKnown RBP14.46□□□□□ -0.09
SYNE1-222ENST00000474655 TIAM2Q8IVF5 1701 aa14.46□□□□□ -0.1
SYNE1-222ENST00000474655 PATL2C9JE40 543 aaKnown RBP14.45□□□□□ -0.1
SYNE1-222ENST00000474655 SEMA3EO15041 775 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 HMGB2P26583 209 aaKnown RBP14.45□□□□□ -0.1
SYNE1-222ENST00000474655 MCM5P33992 734 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 SCRN1Q12765 414 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 NFIXQ14938 502 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 FBXO33Q7Z6M2 555 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 MAGEB6Q8N7X4 407 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 NCOA7Q8NI08 942 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 AIDAQ96BJ3 306 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 CHMP4CQ96CF2 233 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 FAM84BQ96KN1 310 aaPredicted RBP14.45□□□□□ -0.1
SYNE1-222ENST00000474655 LRRC2Q9BYS8 371 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 ANKRD2Q9GZV1 360 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 NBPF3Q9H094 633 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 COL1A1P02452 1464 aaPredicted RBP14.45□□□□□ -0.1
SYNE1-222ENST00000474655 ZNF445P59923 1031 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 FGD1P98174 961 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 STK3Q13188 491 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 CAVIN4Q5BKX8 364 aa14.45□□□□□ -0.1
SYNE1-222ENST00000474655 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.44□□□□□ -0.1
SYNE1-222ENST00000474655 WTIPA6NIX2 430 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-222ENST00000474655 GNAT2P19087 354 aa14.44□□□□□ -0.1
SYNE1-222ENST00000474655 PDIA3P30101 505 aaKnown RBP14.44□□□□□ -0.1
SYNE1-222ENST00000474655 GYG1P46976 350 aa14.44□□□□□ -0.1
SYNE1-222ENST00000474655 MRE11P49959 708 aa14.44□□□□□ -0.1
SYNE1-222ENST00000474655 HAND2P61296 217 aa14.44□□□□□ -0.1
SYNE1-222ENST00000474655 APOBRQ0VD83 1088 aa14.44□□□□□ -0.1
SYNE1-222ENST00000474655 DENND2AQ9ULE3 1009 aa14.44□□□□□ -0.1
SYNE1-222ENST00000474655 KIAA1551Q9HCM1 1747 aa14.44□□□□□ -0.1
SYNE1-222ENST00000474655 MYH15Q9Y2K3 1946 aa14.43□□□□□ -0.1
SYNE1-222ENST00000474655 SALL1Q9NSC2 1324 aa14.43□□□□□ -0.1
SYNE1-222ENST00000474655 IRS2Q9Y4H2 1338 aa14.43□□□□□ -0.1
SYNE1-222ENST00000474655 EP400Q96L91 3159 aa14.43□□□□□ -0.1
SYNE1-222ENST00000474655 PHF14O94880 888 aa14.43□□□□□ -0.1
SYNE1-222ENST00000474655 ANTXR2P58335 489 aa14.43□□□□□ -0.1
SYNE1-222ENST00000474655 USP48Q86UV5 1035 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms