RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 SASH1O94885 1247 aa23.53■■□□□ 1.36
PTCD3-210ENST00000473829 IFIT1P09914 478 aaKnown RBP23.53■■□□□ 1.36
PTCD3-210ENST00000473829 POLA2Q14181 598 aa23.53■■□□□ 1.36
PTCD3-210ENST00000473829 ATP2B3Q16720 1220 aa23.53■■□□□ 1.36
PTCD3-210ENST00000473829 DNAJC5GQ8N7S2 189 aa23.53■■□□□ 1.36
PTCD3-210ENST00000473829 SLC5A1P13866 664 aa23.52■■□□□ 1.36
PTCD3-210ENST00000473829 ATP8B2P98198 1209 aa23.52■■□□□ 1.36
PTCD3-210ENST00000473829 CAVIN4Q5BKX8 364 aa23.52■■□□□ 1.36
PTCD3-210ENST00000473829 SSH3Q8TE77 659 aa23.52■■□□□ 1.36
PTCD3-210ENST00000473829 COL1A1P02452 1464 aaPredicted RBP23.51■■□□□ 1.35
PTCD3-210ENST00000473829 TFCP2Q12800 502 aa23.51■■□□□ 1.35
PTCD3-210ENST00000473829 DLK2Q6UY11 383 aa23.51■■□□□ 1.35
PTCD3-210ENST00000473829 VPS37DQ86XT2 251 aa23.51■■□□□ 1.35
PTCD3-210ENST00000473829 GGA3Q9NZ52 723 aa23.51■■□□□ 1.35
PTCD3-210ENST00000473829 FKBP1AP62942 108 aaKnown RBP23.5■■□□□ 1.35
PTCD3-210ENST00000473829 CEP85Q6P2H3 762 aa23.5■■□□□ 1.35
PTCD3-210ENST00000473829 CREBZFQ9NS37 354 aa23.5■■□□□ 1.35
PTCD3-210ENST00000473829 SCARF1Q14162 830 aa23.49■■□□□ 1.35
PTCD3-210ENST00000473829 OGFOD1Q8N543 542 aa23.49■■□□□ 1.35
PTCD3-210ENST00000473829 DDX19BQ9UMR2 479 aa23.49■■□□□ 1.35
PTCD3-210ENST00000473829 TMEM88BA6NKF7 163 aa23.48■■□□□ 1.35
PTCD3-210ENST00000473829 ADM5C9JUS6 153 aa23.48■■□□□ 1.35
PTCD3-210ENST00000473829 F8W031 263 aaPredicted RBP23.48■■□□□ 1.35
PTCD3-210ENST00000473829 ADORA1P30542 326 aa23.48■■□□□ 1.35
PTCD3-210ENST00000473829 CHAF1AQ13111 956 aaPredicted RBP23.48■■□□□ 1.35
PTCD3-210ENST00000473829 NBPF9Q3BBW0 867 aa23.48■■□□□ 1.35
PTCD3-210ENST00000473829 MFSD14BQ5SR56 506 aa23.48■■□□□ 1.35
PTCD3-210ENST00000473829 CDC37L1Q7L3B6 337 aa23.48■■□□□ 1.35
PTCD3-210ENST00000473829 USP48Q86UV5 1035 aa23.48■■□□□ 1.35
PTCD3-210ENST00000473829 ECM29Q5VYK3 1845 aa23.47■■□□□ 1.35
PTCD3-210ENST00000473829 PDE3AQ14432 1141 aa23.47■■□□□ 1.35
PTCD3-210ENST00000473829 ANGEL2Q5VTE6 544 aaKnown RBP23.47■■□□□ 1.35
PTCD3-210ENST00000473829 CST9Q5W186 159 aa23.47■■□□□ 1.35
PTCD3-210ENST00000473829 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.47■■□□□ 1.35
PTCD3-210ENST00000473829 ZBTB40Q9NUA8 1239 aa23.47■■□□□ 1.35
PTCD3-210ENST00000473829 PCDHAC2Q9Y5I4 1007 aa23.47■■□□□ 1.35
PTCD3-210ENST00000473829 WNT10BO00744 389 aa23.46■■□□□ 1.35
PTCD3-210ENST00000473829 TIMM10P62072 90 aa23.46■■□□□ 1.35
PTCD3-210ENST00000473829 GRIK5Q16478 980 aa23.46■■□□□ 1.35
PTCD3-210ENST00000473829 KRT26Q7Z3Y9 468 aa23.46■■□□□ 1.35
PTCD3-210ENST00000473829 DCPSQ96C86 337 aaKnown RBP23.46■■□□□ 1.35
PTCD3-210ENST00000473829 ZBED3Q96IU2 234 aaPredicted RBP23.46■■□□□ 1.35
PTCD3-210ENST00000473829 HDAC9Q9UKV0 1011 aa23.46■■□□□ 1.35
PTCD3-210ENST00000473829 A0A1B0GUL7 405 aa23.45■■□□□ 1.34
PTCD3-210ENST00000473829 FRAT2O75474 233 aaPredicted RBP23.45■■□□□ 1.34
PTCD3-210ENST00000473829 PHKA1P46020 1223 aa23.45■■□□□ 1.34
PTCD3-210ENST00000473829 G3BP1Q13283 466 aaKnown RBP eCLIP23.45■■□□□ 1.34
PTCD3-210ENST00000473829 KLRG1Q96E93 195 aa23.45■■□□□ 1.34
PTCD3-210ENST00000473829 SCAF8Q9UPN6 1271 aaKnown RBP23.45■■□□□ 1.34
PTCD3-210ENST00000473829 MMP14P50281 582 aa23.44■■□□□ 1.34
PTCD3-210ENST00000473829 AOX1Q06278 1338 aa23.43■■□□□ 1.34
PTCD3-210ENST00000473829 SURF6O75683 361 aaKnown RBP23.43■■□□□ 1.34
PTCD3-210ENST00000473829 NOP58Q9Y2X3 529 aaKnown RBP23.43■■□□□ 1.34
PTCD3-210ENST00000473829 PCNTO95613 3336 aa23.43■■□□□ 1.34
PTCD3-210ENST00000473829 PITPNM2Q9BZ72 1349 aa23.42■■□□□ 1.34
PTCD3-210ENST00000473829 CELF2O95319 508 aaKnown RBP23.42■■□□□ 1.34
PTCD3-210ENST00000473829 CFAP100Q494V2 611 aa23.42■■□□□ 1.34
PTCD3-210ENST00000473829 CCDC102BQ68D86 513 aa23.42■■□□□ 1.34
PTCD3-210ENST00000473829 SULF1Q8IWU6 871 aa23.42■■□□□ 1.34
PTCD3-210ENST00000473829 XAGE2Q96GT9 111 aa23.42■■□□□ 1.34
PTCD3-210ENST00000473829 ZNF408Q9H9D4 720 aa23.42■■□□□ 1.34
PTCD3-210ENST00000473829 MKRN1Q9UHC7 482 aaKnown RBP23.42■■□□□ 1.34
PTCD3-210ENST00000473829 TTF2Q9UNY4 1162 aaKnown RBP23.42■■□□□ 1.34
PTCD3-210ENST00000473829 AKAP2Q9Y2D5 859 aa23.42■■□□□ 1.34
PTCD3-210ENST00000473829 CNTNAP1P78357 1384 aa23.41■■□□□ 1.34
PTCD3-210ENST00000473829 DLGAP5Q15398 846 aa23.41■■□□□ 1.34
PTCD3-210ENST00000473829 SIRT2Q8IXJ6 389 aa23.41■■□□□ 1.34
PTCD3-210ENST00000473829 MTMR14Q8NCE2 650 aa23.41■■□□□ 1.34
PTCD3-210ENST00000473829 RRP1P56182 461 aaKnown RBP23.4■■□□□ 1.34
PTCD3-210ENST00000473829 OS9Q13438 667 aaPredicted RBP23.4■■□□□ 1.34
PTCD3-210ENST00000473829 TBC1D22AQ8WUA7 517 aa23.4■■□□□ 1.34
PTCD3-210ENST00000473829 NEUROD6Q96NK8 337 aa23.4■■□□□ 1.34
PTCD3-210ENST00000473829 SPDYE2BA6NHP3 402 aa23.39■■□□□ 1.33
PTCD3-210ENST00000473829 SPDYE6P0CI01 402 aa23.39■■□□□ 1.33
PTCD3-210ENST00000473829 CDCA5Q96FF9 252 aa23.39■■□□□ 1.33
PTCD3-210ENST00000473829 PRMT6Q96LA8 375 aaPredicted RBP23.39■■□□□ 1.33
PTCD3-210ENST00000473829 ABT1Q9ULW3 272 aaKnown RBP23.39■■□□□ 1.33
PTCD3-210ENST00000473829 EXOC6BQ9Y2D4 811 aa23.39■■□□□ 1.33
PTCD3-210ENST00000473829 RASGRF1Q13972 1273 aa23.38■■□□□ 1.33
PTCD3-210ENST00000473829 TNNI3KQ59H18 835 aa23.38■■□□□ 1.33
PTCD3-210ENST00000473829 GNL3LQ9NVN8 582 aaKnown RBP23.38■■□□□ 1.33
PTCD3-210ENST00000473829 FPGT-TNNI3KV9GXZ4 949 aa23.38■■□□□ 1.33
PTCD3-210ENST00000473829 RASSF10A6NK89 507 aa23.37■■□□□ 1.33
PTCD3-210ENST00000473829 CRKP46108 304 aa23.37■■□□□ 1.33
PTCD3-210ENST00000473829 RPAP2Q8IXW5 612 aaPredicted RBP23.37■■□□□ 1.33
PTCD3-210ENST00000473829 WDR66Q8TBY9 1149 aa23.37■■□□□ 1.33
PTCD3-210ENST00000473829 SERPINA10Q9UK55 444 aa23.37■■□□□ 1.33
PTCD3-210ENST00000473829 TLL2Q9Y6L7 1015 aa23.37■■□□□ 1.33
PTCD3-210ENST00000473829 CLRN2A0PK11 232 aa23.36■■□□□ 1.33
PTCD3-210ENST00000473829 SEMA3EO15041 775 aa23.36■■□□□ 1.33
PTCD3-210ENST00000473829 ZBTB22O15209 634 aa23.36■■□□□ 1.33
PTCD3-210ENST00000473829 RBM5P52756 815 aaKnown RBP eCLIP23.36■■□□□ 1.33
PTCD3-210ENST00000473829 PRAMEF18Q5VWM3 479 aa23.36■■□□□ 1.33
PTCD3-210ENST00000473829 JMYQ8N9B5 988 aa23.36■■□□□ 1.33
PTCD3-210ENST00000473829 CHMP4BQ9H444 224 aaKnown RBP23.36■■□□□ 1.33
PTCD3-210ENST00000473829 GPR108Q9NPR9 543 aa23.36■■□□□ 1.33
PTCD3-210ENST00000473829 DENND2AQ9ULE3 1009 aa23.36■■□□□ 1.33
PTCD3-210ENST00000473829 PRDX5P30044 214 aa23.35■■□□□ 1.33
PTCD3-210ENST00000473829 SAPCD2Q86UD0 394 aa23.35■■□□□ 1.33
PTCD3-210ENST00000473829 DBNDD2Q9BQY9 259 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms