RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 GGNBP2Q9H3C7 697 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 MKL2Q9ULH7 1088 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 PARP3Q9Y6F1 533 aa7.69□□□□□ -1.18
SYNE1-219ENST00000469439 KHNYNO15037 678 aaKnown RBP7.68□□□□□ -1.18
SYNE1-219ENST00000469439 ATP9BO43861 1147 aa7.68□□□□□ -1.18
SYNE1-219ENST00000469439 CENPBP07199 599 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-219ENST00000469439 EPXP11678 715 aa7.68□□□□□ -1.18
SYNE1-219ENST00000469439 CLDN10P78369 228 aa7.68□□□□□ -1.18
SYNE1-219ENST00000469439 TMEM132AQ24JP5 1023 aa7.68□□□□□ -1.18
SYNE1-219ENST00000469439 HDGFL1Q5TGJ6 251 aa7.68□□□□□ -1.18
SYNE1-219ENST00000469439 SLC9A9Q8IVB4 645 aa7.68□□□□□ -1.18
SYNE1-219ENST00000469439 EML1O00423 815 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 ZBTB7BO15156 539 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-219ENST00000469439 EFSO43281 561 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 DIAPH1O60610 1272 aaKnown RBP7.67□□□□□ -1.18
SYNE1-219ENST00000469439 CD33P20138 364 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 MTHFSP49914 203 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 ATP1A2P50993 1020 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 CNGB1Q14028 1251 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-219ENST00000469439 NME9Q86XW9 330 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 TNS4Q8IZW8 715 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 TPCN2Q8NHX9 752 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 RRAGCQ9HB90 399 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 AVENQ9NQS1 362 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-219ENST00000469439 SPATA31A3Q5VYP0 1347 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 RTL1A6NKG5 1358 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 SSH2Q76I76 1423 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 SMG6Q86US8 1419 aaKnown RBP7.67□□□□□ -1.18
SYNE1-219ENST00000469439 CD163L1Q9NR16 1453 aa7.67□□□□□ -1.18
SYNE1-219ENST00000469439 NEURL1BA8MQ27 555 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 GCP02774 474 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 NOS2P35228 1153 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 CCDC102BQ68D86 513 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 BICDL1Q6ZP65 573 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 KLF15Q9UIH9 416 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 GJA3Q9Y6H8 435 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 LTBP4Q8N2S1 1624 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 NALCNQ8IZF0 1738 aa7.66□□□□□ -1.18
SYNE1-219ENST00000469439 PPM1GO15355 546 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-219ENST00000469439 AMPD1P23109 780 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 COL8A1P27658 744 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 ADH6P28332 368 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 FLT4P35916 1363 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 TNNT2P45379 298 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-219ENST00000469439 CALD1Q05682 793 aaKnown RBP7.65□□□□□ -1.18
SYNE1-219ENST00000469439 LAMC2Q13753 1193 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 TBCELQ5QJ74 424 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 TNS3Q68CZ2 1445 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 LINC00114Q6XXX2 140 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 FCHSD1Q86WN1 690 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 FNBP4Q8N3X1 1017 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-219ENST00000469439 CLUAP1Q96AJ1 413 aa7.65□□□□□ -1.18
SYNE1-219ENST00000469439 GPC6Q9Y625 555 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-219ENST00000469439 MYOM1P52179 1685 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 TOPAZ1Q8N9V7 1692 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 OVOS2A0A0J9YW53 1432 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 OVOS2Q6IE36 1432 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 USP19O94966 1318 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 MAPK8IP3Q9UPT6 1336 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 SERTM1A2A2V5 107 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 M0R2N6 131 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 MSTNO14793 375 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 PROCP04070 461 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 DGKGP49619 791 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 LMOD3Q0VAK6 560 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 SH3PXD2AQ5TCZ1 1133 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 ZNF468Q5VIY5 522 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-219ENST00000469439 POTEAQ6S8J7 498 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 ALYREFQ86V81 257 aaKnown RBP7.64□□□□□ -1.19
SYNE1-219ENST00000469439 FAM9BQ8IZU0 186 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 SIX5Q8N196 739 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 LARGE2Q8N3Y3 721 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 OGFOD1Q8N543 542 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 PNISRQ8TF01 805 aaKnown RBP7.64□□□□□ -1.19
SYNE1-219ENST00000469439 C7orf43Q8WVR3 580 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 IP6K1Q92551 441 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 BTBD6Q96KE9 485 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 SPOCK3Q9BQ16 436 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 STRN4Q9NRL3 753 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 POLKQ9UBT6 870 aa7.64□□□□□ -1.19
SYNE1-219ENST00000469439 PLEKHG2Q9H7P9 1386 aa7.63□□□□□ -1.19
SYNE1-219ENST00000469439 DKK1O94907 266 aa7.63□□□□□ -1.19
SYNE1-219ENST00000469439 U2AF1L5P0DN76 240 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-219ENST00000469439 HIRAP54198 1017 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-219ENST00000469439 PSMA6P60900 246 aaKnown RBP7.63□□□□□ -1.19
SYNE1-219ENST00000469439 PIP4K2BP78356 416 aa7.63□□□□□ -1.19
SYNE1-219ENST00000469439 U2AF1Q01081 240 aaKnown RBP eCLIP7.63□□□□□ -1.19
SYNE1-219ENST00000469439 PDE3BQ13370 1112 aa7.63□□□□□ -1.19
SYNE1-219ENST00000469439 GLMNQ92990 594 aa7.63□□□□□ -1.19
SYNE1-219ENST00000469439 CHMP4AQ9BY43 222 aa7.63□□□□□ -1.19
SYNE1-219ENST00000469439 TSPAN10Q9H1Z9 355 aaPredicted RBP7.63□□□□□ -1.19
SYNE1-219ENST00000469439 MARK1Q9P0L2 795 aa7.63□□□□□ -1.19
SYNE1-219ENST00000469439 MKRN1Q9UHC7 482 aaKnown RBP7.63□□□□□ -1.19
SYNE1-219ENST00000469439 ZNF232Q9UNY5 417 aa7.63□□□□□ -1.19
SYNE1-219ENST00000469439 BLMP54132 1417 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-219ENST00000469439 CPDO75976 1380 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 PNPLA6Q8IY17 1366 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 SPATA31A6Q5VVP1 1343 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 KRBA1A5PL33 1030 aa7.62□□□□□ -1.19
SYNE1-219ENST00000469439 PALM3A6NDB9 673 aaPredicted RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms