RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 GPATCH3Q96I76 525 aa9.98□□□□□ -0.81
NPHP3-204ENST00000469232 MS4A4AQ96JQ5 239 aa9.98□□□□□ -0.81
NPHP3-204ENST00000469232 RTFDC1Q9BY42 306 aaPredicted RBP9.98□□□□□ -0.81
NPHP3-204ENST00000469232 BOLA1Q9Y3E2 137 aa9.98□□□□□ -0.81
NPHP3-204ENST00000469232 AKAP11Q9UKA4 1901 aa9.98□□□□□ -0.81
NPHP3-204ENST00000469232 PDS5AQ29RF7 1337 aaKnown RBP9.97□□□□□ -0.81
NPHP3-204ENST00000469232 PPEF1O14829 653 aaPredicted RBP9.97□□□□□ -0.81
NPHP3-204ENST00000469232 TAF5LO75529 589 aa9.97□□□□□ -0.81
NPHP3-204ENST00000469232 SLC5A1P13866 664 aa9.97□□□□□ -0.81
NPHP3-204ENST00000469232 CHRNA5P30532 468 aa9.97□□□□□ -0.81
NPHP3-204ENST00000469232 ADORA1P30542 326 aa9.97□□□□□ -0.81
NPHP3-204ENST00000469232 HELBQ8NG08 1087 aaPredicted RBP9.97□□□□□ -0.81
NPHP3-204ENST00000469232 HAUS7Q99871 368 aa9.97□□□□□ -0.81
NPHP3-204ENST00000469232 SPON1Q9HCB6 807 aa9.97□□□□□ -0.81
NPHP3-204ENST00000469232 RFX7Q2KHR2 1363 aa9.97□□□□□ -0.81
NPHP3-204ENST00000469232 IFIT1P09914 478 aaKnown RBP9.96□□□□□ -0.81
NPHP3-204ENST00000469232 DPEP1P16444 411 aa9.96□□□□□ -0.81
NPHP3-204ENST00000469232 SDSP20132 328 aa9.96□□□□□ -0.81
NPHP3-204ENST00000469232 ATP2B4P23634 1241 aa9.96□□□□□ -0.81
NPHP3-204ENST00000469232 GPSM2P81274 684 aa9.96□□□□□ -0.81
NPHP3-204ENST00000469232 PRPF40BQ6NWY9 871 aaKnown RBP9.96□□□□□ -0.81
NPHP3-204ENST00000469232 MED23Q9ULK4 1368 aa9.96□□□□□ -0.81
NPHP3-204ENST00000469232 WTIPA6NIX2 430 aaPredicted RBP9.96□□□□□ -0.82
NPHP3-204ENST00000469232 G3V3G9 751 aa9.96□□□□□ -0.82
NPHP3-204ENST00000469232 SNAP23O00161 211 aa9.96□□□□□ -0.82
NPHP3-204ENST00000469232 SOCS7O14512 581 aa9.96□□□□□ -0.82
NPHP3-204ENST00000469232 UQCRFS1P1P0C7P4 283 aa9.96□□□□□ -0.82
NPHP3-204ENST00000469232 C8orf34Q49A92 452 aa9.96□□□□□ -0.82
NPHP3-204ENST00000469232 CCDC102BQ68D86 513 aa9.96□□□□□ -0.82
NPHP3-204ENST00000469232 SLC51AQ86UW1 340 aa9.96□□□□□ -0.82
NPHP3-204ENST00000469232 TTLL6Q8N841 843 aa9.96□□□□□ -0.82
NPHP3-204ENST00000469232 FAM84BQ96KN1 310 aaPredicted RBP9.96□□□□□ -0.82
NPHP3-204ENST00000469232 SEMA3EO15041 775 aa9.95□□□□□ -0.82
NPHP3-204ENST00000469232 IGSF3O75054 1194 aa9.95□□□□□ -0.82
NPHP3-204ENST00000469232 PHKA1P46020 1223 aa9.95□□□□□ -0.82
NPHP3-204ENST00000469232 TSHZ3Q63HK5 1081 aa9.95□□□□□ -0.82
NPHP3-204ENST00000469232 TBC1D16Q8TBP0 767 aa9.95□□□□□ -0.82
NPHP3-204ENST00000469232 FAM163AQ96GL9 167 aaPredicted RBP9.95□□□□□ -0.82
NPHP3-204ENST00000469232 NEUROD6Q96NK8 337 aa9.95□□□□□ -0.82
NPHP3-204ENST00000469232 POLLQ9UGP5 575 aa9.95□□□□□ -0.82
NPHP3-204ENST00000469232 CCDC158Q5M9N0 1113 aa9.94□□□□□ -0.82
NPHP3-204ENST00000469232 LCE2DQ5TA82 110 aaPredicted RBP9.94□□□□□ -0.82
NPHP3-204ENST00000469232 EVI5LQ96CN4 794 aa9.94□□□□□ -0.82
NPHP3-204ENST00000469232 BACH2Q9BYV9 841 aa9.94□□□□□ -0.82
NPHP3-204ENST00000469232 GGA1Q9UJY5 639 aa9.94□□□□□ -0.82
NPHP3-204ENST00000469232 A0A0G2JLW4 131 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 IL1R1P14778 569 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 KLRK1P26718 216 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 MCAMP43121 646 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 SCARF1Q14162 830 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 TXNRD3Q86VQ6 643 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 FBXO22Q8NEZ5 403 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 TDRD7Q8NHU6 1098 aaKnown RBP9.93□□□□□ -0.82
NPHP3-204ENST00000469232 ZNF622Q969S3 477 aaKnown RBP eCLIP9.93□□□□□ -0.82
NPHP3-204ENST00000469232 PSMD1Q99460 953 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 TMEM121BQ9BXQ6 578 aaPredicted RBP9.93□□□□□ -0.82
NPHP3-204ENST00000469232 MFRPQ9BY79 579 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 VPS33BQ9H267 617 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 SNRKQ9NRH2 765 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 PIM2Q9P1W9 311 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 ARFGEF1Q9Y6D6 1849 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 COL1A1P02452 1464 aaPredicted RBP9.93□□□□□ -0.82
NPHP3-204ENST00000469232 DOCK2Q92608 1830 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 BCAMP50895 628 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 SOGA3Q5TF21 947 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 TMED8Q6PL24 325 aaPredicted RBP9.93□□□□□ -0.82
NPHP3-204ENST00000469232 MPNDQ8N594 471 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 KBTBD3Q8NAB2 608 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 BOLA2Q9H3K6 86 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 HMG20BQ9P0W2 317 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 ANKIB1Q9P2G1 1089 aa9.93□□□□□ -0.82
NPHP3-204ENST00000469232 NSFL1CQ9UNZ2 370 aaKnown RBP9.93□□□□□ -0.82
NPHP3-204ENST00000469232 CACNA1SQ13698 1873 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 LTBP3Q9NS15 1303 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 FER1L6Q2WGJ9 1857 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 CDC45O75419 566 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 UFL1O94874 794 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 HIBADHP31937 336 aaKnown RBP9.92□□□□□ -0.82
NPHP3-204ENST00000469232 RASGRF1Q13972 1273 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 TTC39AQ5SRH9 613 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 RTKN2Q8IZC4 609 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 CNTROBQ8N137 903 aa9.92□□□□□ -0.82
NPHP3-204ENST00000469232 FAM205AQ6ZU69 1335 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 SALL1Q9NSC2 1324 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 ZNF646O15015 1829 aaPredicted RBP9.91□□□□□ -0.82
NPHP3-204ENST00000469232 EPB41L2O43491 1005 aaKnown RBP9.91□□□□□ -0.82
NPHP3-204ENST00000469232 CYP2E1P05181 493 aaPredicted RBP9.91□□□□□ -0.82
NPHP3-204ENST00000469232 CHMLP26374 656 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 GYG1P46976 350 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 CCDC93Q567U6 631 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 CAVIN4Q5BKX8 364 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 GORABQ5T7V8 394 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 OLFM4Q6UX06 510 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 DPP8Q6V1X1 898 aaPredicted RBP9.91□□□□□ -0.82
NPHP3-204ENST00000469232 TBC1D9Q6ZT07 1266 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 SPATA5Q8NB90 893 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 GNL3LQ9NVN8 582 aaKnown RBP9.91□□□□□ -0.82
NPHP3-204ENST00000469232 PAG1Q9NWQ8 432 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 DENND2AQ9ULE3 1009 aa9.91□□□□□ -0.82
NPHP3-204ENST00000469232 AK9Q5TCS8 1911 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms