RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 TDRD7Q8NHU6 1098 aaKnown RBP13.02□□□□□ -0.33
MSX1-202ENST00000468421 FAM227BQ96M60 508 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 RTFDC1Q9BY42 306 aaPredicted RBP13.02□□□□□ -0.33
MSX1-202ENST00000468421 TMX4Q9H1E5 349 aaPredicted RBP13.02□□□□□ -0.33
MSX1-202ENST00000468421 DIAPH3Q9NSV4 1193 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 GNL3LQ9NVN8 582 aaKnown RBP13.02□□□□□ -0.33
MSX1-202ENST00000468421 PIM2Q9P1W9 311 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 DENND2AQ9ULE3 1009 aa13.02□□□□□ -0.33
MSX1-202ENST00000468421 ZBTB22O15209 634 aa13.01□□□□□ -0.33
MSX1-202ENST00000468421 CCDC93Q567U6 631 aa13.01□□□□□ -0.33
MSX1-202ENST00000468421 CD209Q9NNX6 404 aa13.01□□□□□ -0.33
MSX1-202ENST00000468421 PDS5AQ29RF7 1337 aaKnown RBP13.01□□□□□ -0.33
MSX1-202ENST00000468421 COL4A5P29400 1685 aa13□□□□□ -0.33
MSX1-202ENST00000468421 HIP1O00291 1037 aa13□□□□□ -0.33
MSX1-202ENST00000468421 SEMA3EO15041 775 aa13□□□□□ -0.33
MSX1-202ENST00000468421 SGSM2O43147 1006 aa13□□□□□ -0.33
MSX1-202ENST00000468421 IL1R1P14778 569 aa13□□□□□ -0.33
MSX1-202ENST00000468421 CHAF1AQ13111 956 aaPredicted RBP13□□□□□ -0.33
MSX1-202ENST00000468421 TTF1Q15361 905 aaPredicted RBP13□□□□□ -0.33
MSX1-202ENST00000468421 DALRD3Q5D0E6 543 aaKnown RBP13□□□□□ -0.33
MSX1-202ENST00000468421 JAG2Q9Y219 1238 aa13□□□□□ -0.33
MSX1-202ENST00000468421 RNF113AO15541 343 aaKnown RBP12.99□□□□□ -0.33
MSX1-202ENST00000468421 FRAT2O75474 233 aaPredicted RBP12.99□□□□□ -0.33
MSX1-202ENST00000468421 IDH1O75874 414 aaKnown RBP12.99□□□□□ -0.33
MSX1-202ENST00000468421 WASHC4Q2M389 1173 aa12.99□□□□□ -0.33
MSX1-202ENST00000468421 ZMYM1Q5SVZ6 1142 aa12.99□□□□□ -0.33
MSX1-202ENST00000468421 SEC62Q99442 399 aaKnown RBP12.99□□□□□ -0.33
MSX1-202ENST00000468421 EYA3Q99504 573 aa12.99□□□□□ -0.33
MSX1-202ENST00000468421 FHDC1Q9C0D6 1143 aaPredicted RBP12.99□□□□□ -0.33
MSX1-202ENST00000468421 MYH2Q9UKX2 1941 aa12.98□□□□□ -0.33
MSX1-202ENST00000468421 RAD50Q92878 1312 aa12.98□□□□□ -0.33
MSX1-202ENST00000468421 ADD2P35612 726 aa12.98□□□□□ -0.33
MSX1-202ENST00000468421 DOK7Q18PE1 504 aa12.98□□□□□ -0.33
MSX1-202ENST00000468421 ZNF589Q86UQ0 364 aaPredicted RBP12.98□□□□□ -0.33
MSX1-202ENST00000468421 RTKN2Q8IZC4 609 aa12.98□□□□□ -0.33
MSX1-202ENST00000468421 ZC3H12CQ9C0D7 883 aaKnown RBP12.98□□□□□ -0.33
MSX1-202ENST00000468421 COA1Q9GZY4 146 aa12.98□□□□□ -0.33
MSX1-202ENST00000468421 BCS1LQ9Y276 419 aa12.98□□□□□ -0.33
MSX1-202ENST00000468421 ADAMTSL1Q8N6G6 1762 aa12.98□□□□□ -0.33
MSX1-202ENST00000468421 MAST3O60307 1309 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 TCRBV5S4A2TA0A5A2 114 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 M0R2C6 588 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 PDE6AP16499 860 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 KIAA2012Q0VF49 1180 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 AOC3Q16853 763 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 GRIPAP1Q4V328 841 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 CCDC129Q6ZRS4 1044 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 TICAM2Q86XR7 235 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 RUFY2Q8WXA3 655 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 OSBP2Q969R2 916 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 PSMD1Q99460 953 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.97□□□□□ -0.33
MSX1-202ENST00000468421 DBNDD1Q9H9R9 158 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 ABCF2Q9UG63 623 aa12.97□□□□□ -0.33
MSX1-202ENST00000468421 RBM19Q9Y4C8 960 aaKnown RBP12.97□□□□□ -0.33
MSX1-202ENST00000468421 ZNF532Q9HCE3 1301 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 SALL1Q9NSC2 1324 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 CDK5RAP2Q96SN8 1893 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 ZFYP08048 801 aaPredicted RBP12.96□□□□□ -0.33
MSX1-202ENST00000468421 PRDX5P30044 214 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 GRIK5Q16478 980 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 SLC9C2Q5TAH2 1124 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 SOGA3Q5TF21 947 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 MAGEB6Q8N7X4 407 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 SUPT20HQ8NEM7 779 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 ZNF384Q8TF68 577 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 APPBP2Q92624 585 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 TBC1D32Q96NH3 1257 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 USP26Q9BXU7 913 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 LSG1Q9H089 658 aaKnown RBP12.96□□□□□ -0.33
MSX1-202ENST00000468421 ANO2Q9NQ90 1003 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 HELLSQ9NRZ9 838 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 LRP2BPQ9P2M1 347 aa12.96□□□□□ -0.33
MSX1-202ENST00000468421 CCDC171Q6TFL3 1326 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 FAM205AQ6ZU69 1335 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 NFKBIEO00221 500 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 PPIP5K2O43314 1243 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 ECE2O60344 883 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 REC8O95072 547 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 PTH1RQ03431 593 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 MAP3K12Q12852 859 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 UBE3CQ15386 1083 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 LRRFIP1Q32MZ4 808 aaKnown RBP12.95□□□□□ -0.34
MSX1-202ENST00000468421 MCMDC2Q4G0Z9 681 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 ZSCAN25Q6NSZ9 544 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 WDR66Q8TBY9 1149 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 C22orf23Q9BZE7 217 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 PUS7LQ9H0K6 701 aaKnown RBP12.95□□□□□ -0.34
MSX1-202ENST00000468421 UPF2Q9HAU5 1272 aaKnown RBP12.95□□□□□ -0.34
MSX1-202ENST00000468421 ZNF277Q9NRM2 450 aaPredicted RBP12.95□□□□□ -0.34
MSX1-202ENST00000468421 RAI14Q9P0K7 980 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 DICER1Q9UPY3 1922 aaKnown RBP12.95□□□□□ -0.34
MSX1-202ENST00000468421 SBF1O95248 1867 aa12.95□□□□□ -0.34
MSX1-202ENST00000468421 GTF2IP78347 998 aa12.94□□□□□ -0.34
MSX1-202ENST00000468421 ERICH6Q7L0X2 663 aa12.94□□□□□ -0.34
MSX1-202ENST00000468421 ADGRA1Q86SQ6 560 aa12.94□□□□□ -0.34
MSX1-202ENST00000468421 SYT17Q9BSW7 474 aa12.94□□□□□ -0.34
MSX1-202ENST00000468421 KCNQ5Q9NR82 932 aa12.94□□□□□ -0.34
MSX1-202ENST00000468421 LAMA4Q16363 1823 aa12.94□□□□□ -0.34
MSX1-202ENST00000468421 YDJCA8MPS7 323 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms