RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.13■□□□□ 0.01
SQSTM1-206ENST00000466342 FZD1Q9UP38 647 aa15.13■□□□□ 0.01
SQSTM1-206ENST00000466342 UNCXA6NJT0 531 aa15.12■□□□□ 0.01
SQSTM1-206ENST00000466342 PCCAP05165 728 aaPredicted RBP15.12■□□□□ 0.01
SQSTM1-206ENST00000466342 RTL5Q5HYW3 569 aaPredicted RBP15.12■□□□□ 0.01
SQSTM1-206ENST00000466342 KSR2Q6VAB6 950 aa15.12■□□□□ 0.01
SQSTM1-206ENST00000466342 DPF3Q92784 378 aa15.12■□□□□ 0.01
SQSTM1-206ENST00000466342 SEC31BQ9NQW1 1179 aa15.12■□□□□ 0.01
SQSTM1-206ENST00000466342 PTCH2Q9Y6C5 1203 aa15.12■□□□□ 0.01
SQSTM1-206ENST00000466342 CUL9Q8IWT3 2517 aa15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 ECM29Q5VYK3 1845 aa15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 PPP1R12BO60237 982 aaPredicted RBP15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 DACT2Q5SW24 774 aa15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 G2E3Q7L622 706 aa15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 CLMNQ96JQ2 1002 aa15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 PRO3102Q9H379 93 aa15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 CWC25Q9NXE8 425 aaPredicted RBP15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 MAP3K2Q9Y2U5 619 aa15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 MYO3BQ8WXR4 1341 aa15.11■□□□□ 0.01
SQSTM1-206ENST00000466342 TESPA1A2RU30 521 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 PI4KAP2A4QPH2 592 aa15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 WTIPA6NIX2 430 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 SASH1O94885 1247 aa15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 ATP2B4P23634 1241 aa15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 FLIIQ13045 1269 aa15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 PI4KAP1Q8N8J0 262 aa15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 PTPN18Q99952 460 aa15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 MXD3Q9BW11 206 aa15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 XDHP47989 1333 aa15.1■□□□□ 0.01
SQSTM1-206ENST00000466342 COL1A1P02452 1464 aaPredicted RBP15.09■□□□□ 0.01
SQSTM1-206ENST00000466342 NEXNQ0ZGT2 675 aa15.09■□□□□ 0.01
SQSTM1-206ENST00000466342 ALDH1L2Q3SY69 923 aa15.09■□□□□ 0.01
SQSTM1-206ENST00000466342 STRIP1Q5VSL9 837 aa15.09■□□□□ 0.01
SQSTM1-206ENST00000466342 PDE8AO60658 829 aa15.08■□□□□ 0
SQSTM1-206ENST00000466342 MYCP01106 439 aaPredicted RBP15.08■□□□□ 0
SQSTM1-206ENST00000466342 SSH1Q8WYL5 1049 aa15.08■□□□□ 0
SQSTM1-206ENST00000466342 ZBED3Q96IU2 234 aaPredicted RBP15.08■□□□□ 0
SQSTM1-206ENST00000466342 DEFB129Q9H1M3 183 aa15.08■□□□□ 0
SQSTM1-206ENST00000466342 IGKV5-2P06315 115 aa15.07■□□□□ 0
SQSTM1-206ENST00000466342 GJA5P36382 358 aa15.07■□□□□ 0
SQSTM1-206ENST00000466342 FKBP5Q13451 457 aaPredicted RBP15.07■□□□□ 0
SQSTM1-206ENST00000466342 CCDC152Q4G0S7 254 aa15.07■□□□□ 0
SQSTM1-206ENST00000466342 MRPL50Q8N5N7 158 aaKnown RBP15.07■□□□□ 0
SQSTM1-206ENST00000466342 A0A1W2PPC1 479 aa15.06■□□□□ 0
SQSTM1-206ENST00000466342 SH3TC2Q8TF17 1288 aa15.06■□□□□ 0
SQSTM1-206ENST00000466342 FBXW7Q969H0 707 aa15.06■□□□□ 0
SQSTM1-206ENST00000466342 YTHDC1Q96MU7 727 aaKnown RBP15.06■□□□□ 0
SQSTM1-206ENST00000466342 MED23Q9ULK4 1368 aa15.06■□□□□ 0
SQSTM1-206ENST00000466342 IREB2P48200 963 aaKnown RBP15.05■□□□□ -0
SQSTM1-206ENST00000466342 SUPT20HL1Q3ZLR7 823 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 ANKRD18AQ8IVF6 992 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 HTATIP2Q9BUP3 242 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 ZFYVE28Q9HCC9 887 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 SMC4Q9NTJ3 1288 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 PPP2R3BQ9Y5P8 575 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 NR2E3Q9Y5X4 410 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 SSC5DA1L4H1 1573 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 ZSWIM8A7E2V4 1837 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 SPEF2Q9C093 1822 aa15.05■□□□□ -0
SQSTM1-206ENST00000466342 MYH3P11055 1940 aa15.04■□□□□ -0
SQSTM1-206ENST00000466342 NEURL1BA8MQ27 555 aa15.04■□□□□ -0
SQSTM1-206ENST00000466342 USP2O75604 605 aaPredicted RBP15.04■□□□□ -0
SQSTM1-206ENST00000466342 RARSP54136 660 aaKnown RBP15.04■□□□□ -0
SQSTM1-206ENST00000466342 CWF19L2Q2TBE0 894 aaKnown RBP15.04■□□□□ -0
SQSTM1-206ENST00000466342 TTLL5Q6EMB2 1281 aa15.04■□□□□ -0
SQSTM1-206ENST00000466342 ANKRD13AQ8IZ07 590 aa15.04■□□□□ -0
SQSTM1-206ENST00000466342 JARID2Q92833 1246 aaPredicted RBP15.04■□□□□ -0
SQSTM1-206ENST00000466342 SHISA4Q96DD7 197 aa15.04■□□□□ -0
SQSTM1-206ENST00000466342 MS4A4AQ96JQ5 239 aa15.04■□□□□ -0
SQSTM1-206ENST00000466342 COA1Q9GZY4 146 aa15.04■□□□□ -0
SQSTM1-206ENST00000466342 OTOFQ9HC10 1997 aa15.04■□□□□ -0
SQSTM1-206ENST00000466342 PTPRCP08575 1304 aa15.03■□□□□ -0
SQSTM1-206ENST00000466342 H7C1W4 665 aa15.03■□□□□ -0
SQSTM1-206ENST00000466342 SOX1O00570 391 aaPredicted RBP15.03■□□□□ -0
SQSTM1-206ENST00000466342 TAF1CQ15572 869 aaPredicted RBP15.03■□□□□ -0
SQSTM1-206ENST00000466342 KIAA0825Q8IV33 1275 aa15.03■□□□□ -0
SQSTM1-206ENST00000466342 DNAAF4Q8WXU2 420 aa15.03■□□□□ -0
SQSTM1-206ENST00000466342 GNRH1P01148 92 aa15.02■□□□□ -0
SQSTM1-206ENST00000466342 CTSWP56202 376 aa15.02■□□□□ -0
SQSTM1-206ENST00000466342 KIF22Q14807 665 aa15.02■□□□□ -0
SQSTM1-206ENST00000466342 DLGAP5Q15398 846 aa15.02■□□□□ -0
SQSTM1-206ENST00000466342 LINS1Q8NG48 757 aa15.02■□□□□ -0
SQSTM1-206ENST00000466342 TTLL11Q8NHH1 800 aa15.02■□□□□ -0
SQSTM1-206ENST00000466342 NKX2-3Q8TAU0 364 aa15.02■□□□□ -0
SQSTM1-206ENST00000466342 LRCH3Q96II8 777 aa15.02■□□□□ -0
SQSTM1-206ENST00000466342 KIF16BQ96L93 1317 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 F6X3S4 739 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 ZBTB7BO15156 539 aaPredicted RBP15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 CCT4P50991 539 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 PRMT2P55345 433 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 GCKRQ14397 625 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 MTFR1Q15390 333 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 NBPF12Q5TAG4 269 aaPredicted RBP15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 UBE2Q1Q7Z7E8 422 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 MTMR14Q8NCE2 650 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 OPTNQ96CV9 577 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 CCDC85AQ96PX6 553 aaPredicted RBP15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 CDC5LQ99459 802 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 MINPP1Q9UNW1 487 aa15.01□□□□□ -0.01
SQSTM1-206ENST00000466342 UNC80Q8N2C7 3258 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms