RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 TYRO3Q06418 890 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 SFSWAPQ12872 951 aaKnown RBP6.43□□□□□ -1.38
CSMD3-205ENST00000462254 ANKRD13AQ8IZ07 590 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 IFT43Q96FT9 208 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 MBIPQ9NS73 344 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 PHF24Q9UPV7 400 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 STRCQ7RTU9 1775 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 ADGRF5Q8IZF2 1346 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 ADGRB1O14514 1584 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 ALKQ9UM73 1620 aa6.43□□□□□ -1.38
CSMD3-205ENST00000462254 CHD2O14647 1828 aaKnown RBP6.42□□□□□ -1.38
CSMD3-205ENST00000462254 TGFBR3LH3BV60 316 aa6.42□□□□□ -1.38
CSMD3-205ENST00000462254 ADAMTS2O95450 1211 aa6.42□□□□□ -1.38
CSMD3-205ENST00000462254 GRNP28799 593 aaKnown RBP6.42□□□□□ -1.38
CSMD3-205ENST00000462254 MTMR3Q13615 1198 aa6.42□□□□□ -1.38
CSMD3-205ENST00000462254 NAALADL2Q58DX5 795 aa6.42□□□□□ -1.38
CSMD3-205ENST00000462254 ETFBKMTQ8IXQ9 262 aa6.42□□□□□ -1.38
CSMD3-205ENST00000462254 GTF3C2Q8WUA4 911 aaPredicted RBP6.42□□□□□ -1.38
CSMD3-205ENST00000462254 BRD7Q9NPI1 651 aa6.42□□□□□ -1.38
CSMD3-205ENST00000462254 RPGRIP1LQ68CZ1 1315 aa6.42□□□□□ -1.38
CSMD3-205ENST00000462254 ZBTB39O15060 712 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 MICAL2O94851 1124 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 RECKO95980 971 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 SLURP2P0DP57 97 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 SERPINB4P48594 390 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 SRSF11Q05519 484 aaKnown RBP6.41□□□□□ -1.38
CSMD3-205ENST00000462254 WHAMMQ8TF30 809 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 MARK1Q9P0L2 795 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 USP20Q9Y2K6 914 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 DNMT3AQ9Y6K1 912 aaPredicted RBP6.41□□□□□ -1.38
CSMD3-205ENST00000462254 GPRASP1Q5JY77 1395 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 TMEM2Q9UHN6 1383 aa6.41□□□□□ -1.38
CSMD3-205ENST00000462254 OPLAHO14841 1288 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 BMP4P12644 408 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 INPP5BP32019 993 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 IDH3AP50213 366 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 HIF1AQ16665 826 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 IER5Q5VY09 327 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 FBXO33Q7Z6M2 555 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 TREML1Q86YW5 311 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 SLC30A3Q99726 388 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 ANO2Q9NQ90 1003 aa6.4□□□□□ -1.38
CSMD3-205ENST00000462254 BIN2Q9UBW5 565 aaPredicted RBP6.4□□□□□ -1.38
CSMD3-205ENST00000462254 LMTK3Q96Q04 1460 aa6.4□□□□□ -1.39
CSMD3-205ENST00000462254 SCAF11Q99590 1463 aaKnown RBP6.4□□□□□ -1.39
CSMD3-205ENST00000462254 DIP2AQ14689 1571 aa6.4□□□□□ -1.39
CSMD3-205ENST00000462254 XRN1Q8IZH2 1706 aaKnown RBP6.39□□□□□ -1.39
CSMD3-205ENST00000462254 STRCP1A6NGW2 1772 aa6.39□□□□□ -1.39
CSMD3-205ENST00000462254 LAMC2Q13753 1193 aa6.39□□□□□ -1.39
CSMD3-205ENST00000462254 ACDQ96AP0 544 aa6.39□□□□□ -1.39
CSMD3-205ENST00000462254 POLR3GLQ9BT43 218 aa6.39□□□□□ -1.39
CSMD3-205ENST00000462254 BCL11AQ9H165 835 aa6.39□□□□□ -1.39
CSMD3-205ENST00000462254 STIM2Q9P246 746 aa6.39□□□□□ -1.39
CSMD3-205ENST00000462254 ROCK2O75116 1388 aaKnown RBP6.39□□□□□ -1.39
CSMD3-205ENST00000462254 MYOM1P52179 1685 aa6.39□□□□□ -1.39
CSMD3-205ENST00000462254 ABL1P00519 1130 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 BRD2P25440 801 aaKnown RBP6.38□□□□□ -1.39
CSMD3-205ENST00000462254 LTKP29376 864 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 KCNQ4P56696 695 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 ZNF211Q13398 564 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-205ENST00000462254 FAM182BQ5T319 152 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 LYPD4Q6UWN0 246 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 RAB44Q7Z6P3 723 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-205ENST00000462254 ATCAYQ86WG3 371 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 HELQQ8TDG4 1101 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 PPP1R1BQ9UD71 204 aaPredicted RBP6.38□□□□□ -1.39
CSMD3-205ENST00000462254 KLF15Q9UIH9 416 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 KCNH4Q9UQ05 1017 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 USP47Q96K76 1375 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 ADAMTS13Q76LX8 1427 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 MED14O60244 1454 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 CPS1P31327 1500 aa6.38□□□□□ -1.39
CSMD3-205ENST00000462254 XIRP1Q702N8 1843 aaKnown RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 RGPD8O14715 1765 aaPredicted RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 PLEKHG1Q9ULL1 1385 aa6.37□□□□□ -1.39
CSMD3-205ENST00000462254 HSPA5P11021 654 aaKnown RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 PCBP4P57723 403 aaKnown RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 C1orf229Q6ZS94 237 aaPredicted RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 RGL4Q8IZJ4 473 aa6.37□□□□□ -1.39
CSMD3-205ENST00000462254 HIRIP3Q9BW71 556 aaPredicted RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 OXCT2Q9BYC2 517 aaPredicted RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 CWC22Q9HCG8 908 aaKnown RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 EGFL7Q9UHF1 273 aa6.37□□□□□ -1.39
CSMD3-205ENST00000462254 NSFL1CQ9UNZ2 370 aaKnown RBP6.37□□□□□ -1.39
CSMD3-205ENST00000462254 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.36□□□□□ -1.39
CSMD3-205ENST00000462254 ANKRD62A6NC57 917 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 MAP2K3P46734 347 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 ARSDP51689 593 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 SPEM2Q0P670 501 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 COL19A1Q14993 1142 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 ZNF385CQ66K41 422 aaPredicted RBP6.36□□□□□ -1.39
CSMD3-205ENST00000462254 THEMISQ8N1K5 641 aaPredicted RBP6.36□□□□□ -1.39
CSMD3-205ENST00000462254 ZSCAN1Q8NBB4 408 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.36□□□□□ -1.39
CSMD3-205ENST00000462254 CARD11Q9BXL7 1154 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 GSX2Q9BZM3 304 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 C14orf93Q9H972 538 aaKnown RBP6.36□□□□□ -1.39
CSMD3-205ENST00000462254 GGA1Q9UJY5 639 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 PRR12Q9ULL5 1215 aa6.36□□□□□ -1.39
CSMD3-205ENST00000462254 RTCBQ9Y3I0 505 aaKnown RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms