RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MKL2Q9ULH7 1088 aa10.68□□□□□ -0.7
USP54-208ENST00000461520 IFT172Q9UG01 1749 aa10.67□□□□□ -0.7
USP54-208ENST00000461520 LRPPRCP42704 1394 aaKnown RBP10.67□□□□□ -0.7
USP54-208ENST00000461520 ABCC11Q96J66 1382 aa10.67□□□□□ -0.7
USP54-208ENST00000461520 LAMC1P11047 1609 aa10.67□□□□□ -0.7
USP54-208ENST00000461520 RBM6P78332 1123 aaKnown RBP10.67□□□□□ -0.7
USP54-208ENST00000461520 STAG2Q8N3U4 1231 aa10.67□□□□□ -0.7
USP54-208ENST00000461520 CEP63Q96MT8 703 aa10.67□□□□□ -0.7
USP54-208ENST00000461520 ARXQ96QS3 562 aa10.67□□□□□ -0.7
USP54-208ENST00000461520 SLC30A3Q99726 388 aa10.67□□□□□ -0.7
USP54-208ENST00000461520 QTRT2Q9H974 415 aaKnown RBP10.67□□□□□ -0.7
USP54-208ENST00000461520 AVENQ9NQS1 362 aaPredicted RBP10.67□□□□□ -0.7
USP54-208ENST00000461520 CDC42BPGQ6DT37 1551 aa10.66□□□□□ -0.7
USP54-208ENST00000461520 LINC00114Q6XXX2 140 aa10.66□□□□□ -0.7
USP54-208ENST00000461520 SYT9Q86SS6 491 aa10.66□□□□□ -0.7
USP54-208ENST00000461520 STK26Q9P289 416 aa10.66□□□□□ -0.7
USP54-208ENST00000461520 ANKIB1Q9P2G1 1089 aa10.66□□□□□ -0.7
USP54-208ENST00000461520 RAB3GAP2Q9H2M9 1393 aa10.65□□□□□ -0.7
USP54-208ENST00000461520 TMEM132EQ6IEE7 984 aa10.65□□□□□ -0.7
USP54-208ENST00000461520 CHSY3Q70JA7 882 aa10.65□□□□□ -0.7
USP54-208ENST00000461520 WAPLQ7Z5K2 1190 aa10.65□□□□□ -0.7
USP54-208ENST00000461520 BRD7Q9NPI1 651 aa10.65□□□□□ -0.7
USP54-208ENST00000461520 NPHP3Q7Z494 1330 aa10.64□□□□□ -0.71
USP54-208ENST00000461520 MYOM2P54296 1465 aa10.64□□□□□ -0.71
USP54-208ENST00000461520 NRXN1Q9ULB1 1477 aa10.64□□□□□ -0.71
USP54-208ENST00000461520 SUV39H2Q9H5I1 410 aa10.64□□□□□ -0.71
USP54-208ENST00000461520 C14orf93Q9H972 538 aaKnown RBP10.64□□□□□ -0.71
USP54-208ENST00000461520 YTHDC2Q9H6S0 1430 aaKnown RBP10.64□□□□□ -0.71
USP54-208ENST00000461520 KNDC1Q76NI1 1749 aa10.64□□□□□ -0.71
USP54-208ENST00000461520 COL8A1P27658 744 aa10.63□□□□□ -0.71
USP54-208ENST00000461520 PLA2G4EQ3MJ16 856 aa10.63□□□□□ -0.71
USP54-208ENST00000461520 RAB44Q7Z6P3 723 aaPredicted RBP10.63□□□□□ -0.71
USP54-208ENST00000461520 ITGB2P05107 769 aa10.62□□□□□ -0.71
USP54-208ENST00000461520 IGFBP4P22692 258 aa10.62□□□□□ -0.71
USP54-208ENST00000461520 DGKGP49619 791 aa10.62□□□□□ -0.71
USP54-208ENST00000461520 TYRO3Q06418 890 aa10.62□□□□□ -0.71
USP54-208ENST00000461520 SPEM2Q0P670 501 aa10.62□□□□□ -0.71
USP54-208ENST00000461520 DHX57Q6P158 1386 aaKnown RBP10.62□□□□□ -0.71
USP54-208ENST00000461520 PLEKHH1Q9ULM0 1364 aa10.62□□□□□ -0.71
USP54-208ENST00000461520 FAM200AQ8TCP9 573 aa10.61□□□□□ -0.71
USP54-208ENST00000461520 USP21Q9UK80 565 aa10.61□□□□□ -0.71
USP54-208ENST00000461520 KCNH4Q9UQ05 1017 aa10.61□□□□□ -0.71
USP54-208ENST00000461520 COL22A1Q8NFW1 1626 aaPredicted RBP10.61□□□□□ -0.71
USP54-208ENST00000461520 PXDNQ92626 1479 aa10.61□□□□□ -0.71
USP54-208ENST00000461520 FOXO3O43524 673 aa10.6□□□□□ -0.71
USP54-208ENST00000461520 BTLAQ7Z6A9 289 aa10.6□□□□□ -0.71
USP54-208ENST00000461520 ZMYND15Q9H091 742 aa10.6□□□□□ -0.71
USP54-208ENST00000461520 TRPC5Q9UL62 973 aaPredicted RBP10.6□□□□□ -0.71
USP54-208ENST00000461520 MARF1Q9Y4F3 1742 aaKnown RBP10.6□□□□□ -0.71
USP54-208ENST00000461520 SRCAPQ6ZRS2 3230 aa10.59□□□□□ -0.71
USP54-208ENST00000461520 ELOA3CA0A087WX78 387 aaPredicted RBP10.59□□□□□ -0.71
USP54-208ENST00000461520 KRBA1A5PL33 1030 aa10.59□□□□□ -0.71
USP54-208ENST00000461520 ELOA3DA6NLF2 546 aaPredicted RBP10.59□□□□□ -0.71
USP54-208ENST00000461520 GNB5O14775 395 aa10.59□□□□□ -0.71
USP54-208ENST00000461520 SIN3BO75182 1162 aa10.59□□□□□ -0.71
USP54-208ENST00000461520 RTN1Q16799 776 aa10.59□□□□□ -0.71
USP54-208ENST00000461520 ELOA3BQ3SY89 546 aa10.59□□□□□ -0.71
USP54-208ENST00000461520 ELOA3Q8NG57 546 aa10.59□□□□□ -0.71
USP54-208ENST00000461520 IGHA1P01876 353 aa10.58□□□□□ -0.72
USP54-208ENST00000461520 WEE1P30291 646 aa10.58□□□□□ -0.72
USP54-208ENST00000461520 KCNQ4P56696 695 aa10.58□□□□□ -0.72
USP54-208ENST00000461520 MDFIQ99750 246 aa10.58□□□□□ -0.72
USP54-208ENST00000461520 NOVA2Q9UNW9 492 aaKnown RBP10.58□□□□□ -0.72
USP54-208ENST00000461520 BCS1LQ9Y276 419 aa10.58□□□□□ -0.72
USP54-208ENST00000461520 FMN2Q9NZ56 1722 aa10.58□□□□□ -0.72
USP54-208ENST00000461520 ATRNO75882 1429 aa10.58□□□□□ -0.72
USP54-208ENST00000461520 ALAS2P22557 587 aa10.57□□□□□ -0.72
USP54-208ENST00000461520 XPCQ01831 940 aaPredicted RBP10.57□□□□□ -0.72
USP54-208ENST00000461520 PRAM1Q96QH2 718 aa10.57□□□□□ -0.72
USP54-208ENST00000461520 KLK14Q9P0G3 267 aa10.57□□□□□ -0.72
USP54-208ENST00000461520 DLC1Q96QB1 1528 aa10.57□□□□□ -0.72
USP54-208ENST00000461520 KIF1AQ12756 1690 aa10.57□□□□□ -0.72
USP54-208ENST00000461520 HIF1AQ16665 826 aa10.56□□□□□ -0.72
USP54-208ENST00000461520 DCAF11Q8TEB1 546 aa10.56□□□□□ -0.72
USP54-208ENST00000461520 POGKQ9P215 609 aa10.56□□□□□ -0.72
USP54-208ENST00000461520 ADGRB1O14514 1584 aa10.56□□□□□ -0.72
USP54-208ENST00000461520 SPATA31A3Q5VYP0 1347 aa10.56□□□□□ -0.72
USP54-208ENST00000461520 EP400Q96L91 3159 aa10.55□□□□□ -0.72
USP54-208ENST00000461520 ADARB2-AS1A8MUL3 147 aa10.55□□□□□ -0.72
USP54-208ENST00000461520 SAFB2Q14151 953 aaKnown RBP eCLIP10.55□□□□□ -0.72
USP54-208ENST00000461520 KRT28Q7Z3Y7 464 aa10.55□□□□□ -0.72
USP54-208ENST00000461520 BHMTQ93088 406 aa10.55□□□□□ -0.72
USP54-208ENST00000461520 BCL9LQ86UU0 1499 aa10.55□□□□□ -0.72
USP54-208ENST00000461520 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.54□□□□□ -0.72
USP54-208ENST00000461520 MSTNO14793 375 aa10.54□□□□□ -0.72
USP54-208ENST00000461520 NEUROD1Q13562 356 aa10.54□□□□□ -0.72
USP54-208ENST00000461520 ANKARQ7Z5J8 1434 aa10.54□□□□□ -0.72
USP54-208ENST00000461520 TNFRSF25Q93038 417 aa10.54□□□□□ -0.72
USP54-208ENST00000461520 PRIMPOLQ96LW4 560 aa10.54□□□□□ -0.72
USP54-208ENST00000461520 SPOCK3Q9BQ16 436 aa10.54□□□□□ -0.72
USP54-208ENST00000461520 DMGDHQ9UI17 866 aaKnown RBP10.54□□□□□ -0.72
USP54-208ENST00000461520 TRAK1Q9UPV9 953 aa10.54□□□□□ -0.72
USP54-208ENST00000461520 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.53□□□□□ -0.72
USP54-208ENST00000461520 TGFBR3LH3BV60 316 aa10.53□□□□□ -0.72
USP54-208ENST00000461520 PIK3R2O00459 728 aa10.53□□□□□ -0.72
USP54-208ENST00000461520 SRPK2P78362 688 aaKnown RBP10.53□□□□□ -0.72
USP54-208ENST00000461520 DGKZQ13574 1117 aa10.53□□□□□ -0.72
USP54-208ENST00000461520 IER5Q5VY09 327 aa10.53□□□□□ -0.72
USP54-208ENST00000461520 VTI1AQ96AJ9 217 aa10.53□□□□□ -0.72
USP54-208ENST00000461520 TRIM11Q96F44 468 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms