RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 LINC00301Q8NCQ3 95 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 MROH7-TTC4A0A0A0MT08 1334 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 USP31Q70CQ4 1352 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 ITSN1Q15811 1721 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 GPS2Q13227 327 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 DBNDD2Q9BQY9 259 aa13.54□□□□□ -0.24
CPSF3-202ENST00000460593 KIF28PB7ZC32 967 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 PFKFB1P16118 471 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 NLRP12P59046 1061 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 FAM193AP78312 1265 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 TFCP2Q12800 502 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 KRT32Q14532 448 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 TSGA10IPQ3SY00 556 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 USPL1Q5W0Q7 1092 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 ADALQ6DHV7 355 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 SLC26A8Q96RN1 970 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 SNRKQ9NRH2 765 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 FANCLQ9NW38 375 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 GRM8O00222 908 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 TOP1P11387 765 aaKnown RBP13.53□□□□□ -0.24
CPSF3-202ENST00000460593 NOP2P46087 812 aaKnown RBP13.53□□□□□ -0.24
CPSF3-202ENST00000460593 SRLQ86TD4 932 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 TSPYL1Q9H0U9 437 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 ATG3Q9NT62 314 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 WDHD1O75717 1129 aaPredicted RBP13.53□□□□□ -0.24
CPSF3-202ENST00000460593 PDIA3P30101 505 aaKnown RBP13.53□□□□□ -0.24
CPSF3-202ENST00000460593 HAND2P61296 217 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 INTS13Q9NVM9 706 aa13.53□□□□□ -0.24
CPSF3-202ENST00000460593 AKAP12Q02952 1782 aa13.52□□□□□ -0.24
CPSF3-202ENST00000460593 SPTLC2O15270 562 aa13.52□□□□□ -0.24
CPSF3-202ENST00000460593 DHX32Q7L7V1 743 aaKnown RBP13.52□□□□□ -0.24
CPSF3-202ENST00000460593 AIFM3Q96NN9 605 aa13.52□□□□□ -0.24
CPSF3-202ENST00000460593 CARMIL3Q8ND23 1372 aa13.52□□□□□ -0.25
CPSF3-202ENST00000460593 PLEKHG3A1L390 1219 aa13.52□□□□□ -0.25
CPSF3-202ENST00000460593 CHD2O14647 1828 aaKnown RBP13.52□□□□□ -0.25
CPSF3-202ENST00000460593 SPECC1Q5M775 1068 aa13.52□□□□□ -0.25
CPSF3-202ENST00000460593 TMEM139Q8IV31 216 aa13.52□□□□□ -0.25
CPSF3-202ENST00000460593 FBXO18Q8NFZ0 1043 aa13.52□□□□□ -0.25
CPSF3-202ENST00000460593 CCDC12Q8WUD4 166 aaPredicted RBP13.52□□□□□ -0.25
CPSF3-202ENST00000460593 LZTFL1Q9NQ48 299 aa13.52□□□□□ -0.25
CPSF3-202ENST00000460593 FOXN1O15353 648 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 MYL6BP14649 208 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 CDC27P30260 824 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 MRFAP1Q9Y605 127 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 MAP3K9P80192 1104 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 PDE4BQ07343 736 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 KSR2Q6VAB6 950 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 GPR161Q8N6U8 529 aaKnown RBP13.51□□□□□ -0.25
CPSF3-202ENST00000460593 CLIC6Q96NY7 704 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 RTEL1Q9NZ71 1219 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 U3KPZ7 1027 aaPredicted RBP13.51□□□□□ -0.25
CPSF3-202ENST00000460593 SPATA31D1Q6ZQQ2 1576 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 SETD1BQ9UPS6 1966 aaKnown RBP13.51□□□□□ -0.25
CPSF3-202ENST00000460593 TRMT44Q8IYL2 757 aaKnown RBP13.51□□□□□ -0.25
CPSF3-202ENST00000460593 LRRC59Q96AG4 307 aaKnown RBP13.51□□□□□ -0.25
CPSF3-202ENST00000460593 AK7Q96M32 723 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 MRPL44Q9H9J2 332 aaKnown RBP13.51□□□□□ -0.25
CPSF3-202ENST00000460593 FAN1Q9Y2M0 1017 aa13.51□□□□□ -0.25
CPSF3-202ENST00000460593 RHOXF2BP0C7M4 288 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 ZNF827Q17R98 1081 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 MCMDC2Q4G0Z9 681 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 HSP90AB3PQ58FF7 597 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 RSRC2Q7L4I2 434 aaKnown RBP13.5□□□□□ -0.25
CPSF3-202ENST00000460593 VSTM4Q8IW00 320 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 PNKPQ96T60 521 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 RHOXF2Q9BQY4 288 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 DBF4Q9UBU7 674 aaPredicted RBP13.5□□□□□ -0.25
CPSF3-202ENST00000460593 AGLP35573 1532 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 E7EWF7 191 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 GOLIM4O00461 696 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 PLPPR3Q6T4P5 718 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 PACS2Q86VP3 889 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 GOLGA5Q8TBA6 731 aa13.5□□□□□ -0.25
CPSF3-202ENST00000460593 BAG1Q99933 345 aaPredicted RBP13.5□□□□□ -0.25
CPSF3-202ENST00000460593 IGKV5-2P06315 115 aa13.49□□□□□ -0.25
CPSF3-202ENST00000460593 ACTN2P35609 894 aa13.49□□□□□ -0.25
CPSF3-202ENST00000460593 KIFC2Q96AC6 838 aa13.49□□□□□ -0.25
CPSF3-202ENST00000460593 C8orf76Q96K31 380 aa13.49□□□□□ -0.25
CPSF3-202ENST00000460593 LLPHQ9BRT6 129 aaKnown RBP13.49□□□□□ -0.25
CPSF3-202ENST00000460593 SRRTQ9BXP5 876 aaKnown RBP13.49□□□□□ -0.25
CPSF3-202ENST00000460593 RXRAP19793 462 aa13.49□□□□□ -0.25
CPSF3-202ENST00000460593 PSME1Q06323 249 aa13.49□□□□□ -0.25
CPSF3-202ENST00000460593 CPLX3Q8WVH0 158 aa13.49□□□□□ -0.25
CPSF3-202ENST00000460593 RNF216Q9NWF9 866 aaPredicted RBP13.49□□□□□ -0.25
CPSF3-202ENST00000460593 SALL1Q9NSC2 1324 aa13.49□□□□□ -0.25
CPSF3-202ENST00000460593 GTF2A1P52655 376 aaPredicted RBP13.48□□□□□ -0.25
CPSF3-202ENST00000460593 AXDND1Q5T1B0 1012 aaPredicted RBP13.48□□□□□ -0.25
CPSF3-202ENST00000460593 MYSM1Q5VVJ2 828 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 DRC1Q96MC2 740 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 JCADQ9P266 1359 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 SOWAHDA6NJG2 315 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 ZSCAN12O43309 604 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 KCNJ6P48051 423 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 SART3Q15020 963 aaKnown RBP13.48□□□□□ -0.25
CPSF3-202ENST00000460593 TNNI3KQ59H18 835 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 FOXP4Q8IVH2 680 aaPredicted RBP13.48□□□□□ -0.25
CPSF3-202ENST00000460593 GOLGA1Q92805 767 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 NEUROD6Q96NK8 337 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 BPIFA3Q9BQP9 254 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 FPGT-TNNI3KV9GXZ4 949 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms