RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 NAA30Q147X3 362 aaPredicted RBP9.93□□□□□ -0.82
VPS50-208ENST00000458707 PTPN14Q15678 1187 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 CCAR2Q8N163 923 aaKnown RBP9.93□□□□□ -0.82
VPS50-208ENST00000458707 OSBPL5Q9H0X9 879 aaPredicted RBP9.93□□□□□ -0.82
VPS50-208ENST00000458707 GOLPH3LQ9H4A5 285 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 ANO10Q9NW15 660 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 SH3TC1Q8TE82 1336 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 NUP188Q5SRE5 1749 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 PRAMEF22A3QJZ6 481 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 CCDC69A6NI79 296 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 NEURL1BA8MQ27 555 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 VGLL3A8MV65 326 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 CTDNEP1O95476 244 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 RFX5P48382 616 aaPredicted RBP9.93□□□□□ -0.82
VPS50-208ENST00000458707 GSDMDP57764 484 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 FAM160A1Q05DH4 1040 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 GCKRQ14397 625 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 MCMDC2Q4G0Z9 681 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 TNNI3KQ59H18 835 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 C1orf141Q5JVX7 400 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 CCDC73Q6ZRK6 1079 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 DDX11Q96FC9 970 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 ERO1AQ96HE7 468 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 ZNF396Q96N95 335 aaPredicted RBP9.93□□□□□ -0.82
VPS50-208ENST00000458707 SIL1Q9H173 461 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 IMPACTQ9P2X3 320 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 DBNLQ9UJU6 430 aaKnown RBP9.93□□□□□ -0.82
VPS50-208ENST00000458707 PHF8Q9UPP1 1060 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 FPGT-TNNI3KV9GXZ4 949 aa9.93□□□□□ -0.82
VPS50-208ENST00000458707 PALLDQ8WX93 1383 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 TJP1Q07157 1748 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 SLFN14P0C7P3 912 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 KCNA6P17658 529 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 KCNJ6P48051 423 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 FAM193AP78312 1265 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 ARID5BQ14865 1188 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 EDC3Q96F86 508 aaKnown RBP9.92□□□□□ -0.82
VPS50-208ENST00000458707 L3MBTL3Q96JM7 780 aaPredicted RBP9.92□□□□□ -0.82
VPS50-208ENST00000458707 HAUS7Q99871 368 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 BPIFA3Q9BQP9 254 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 ZNF215Q9UL58 517 aaPredicted RBP9.92□□□□□ -0.82
VPS50-208ENST00000458707 ERBB3P21860 1342 aa9.92□□□□□ -0.82
VPS50-208ENST00000458707 BECN2A8MW95 431 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 KINO60870 393 aaKnown RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 EXOSC10Q01780 885 aaKnown RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 RABL6Q3YEC7 729 aaPredicted RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 KMT5BQ4FZB7 885 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 EPHA10Q5JZY3 1008 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 STOX1Q6ZVD7 989 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 DHX32Q7L7V1 743 aaKnown RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 CEP57L1Q8IYX8 460 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 KLHDC4Q8TBB5 520 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 LRRC59Q96AG4 307 aaKnown RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 USP28Q96RU2 1077 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 METTL22Q9BUU2 404 aaPredicted RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 NAT10Q9H0A0 1025 aaKnown RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 USP16Q9Y5T5 823 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 PTPN12Q05209 780 aaKnown RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 NEXNQ0ZGT2 675 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 DHX8Q14562 1220 aaKnown RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 RIC3Q7Z5B4 369 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 NBPF11Q86T75 865 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 FMR1NBQ8N0W7 255 aaPredicted RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 KRT222Q8N1A0 295 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 THEMISQ8N1K5 641 aaPredicted RBP9.91□□□□□ -0.82
VPS50-208ENST00000458707 FBXL16Q8N461 479 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 L2HGDHQ9H9P8 463 aa9.91□□□□□ -0.82
VPS50-208ENST00000458707 GLI3P10071 1580 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 A0A1W2PQ27 194 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 A0A1W2PQ64 194 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 A0A1W2PQD8 194 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 PTPDC1A2A3K4 754 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 SLU7O95391 586 aaKnown RBP9.9□□□□□ -0.82
VPS50-208ENST00000458707 TUBB4AP04350 444 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 MMRN1Q13201 1228 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 CCDC129Q6ZRS4 1044 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 SPNS2Q8IVW8 549 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 KBTBD3Q8NAB2 608 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 ZNF592Q92610 1267 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 CHMP4CQ96CF2 233 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 DNAJC2Q99543 621 aaKnown RBP9.9□□□□□ -0.82
VPS50-208ENST00000458707 DSCC1Q9BVC3 393 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 FTOQ9C0B1 505 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS50-208ENST00000458707 CCDC9Q9Y3X0 531 aaKnown RBP9.9□□□□□ -0.82
VPS50-208ENST00000458707 ZNF335Q9H4Z2 1342 aaPredicted RBP9.9□□□□□ -0.82
VPS50-208ENST00000458707 TMEM94Q12767 1356 aa9.9□□□□□ -0.82
VPS50-208ENST00000458707 PKD1L3Q7Z443 1732 aa9.9□□□□□ -0.83
VPS50-208ENST00000458707 CHD4Q14839 1912 aa9.9□□□□□ -0.83
VPS50-208ENST00000458707 PSDA5PKW4 1024 aaPredicted RBP9.89□□□□□ -0.83
VPS50-208ENST00000458707 CEBPAP49715 358 aaPredicted RBP9.89□□□□□ -0.83
VPS50-208ENST00000458707 CEBPZQ03701 1054 aaKnown RBP9.89□□□□□ -0.83
VPS50-208ENST00000458707 TFCP2Q12800 502 aa9.89□□□□□ -0.83
VPS50-208ENST00000458707 AIMP1Q12904 312 aaKnown RBP9.89□□□□□ -0.83
VPS50-208ENST00000458707 MKRN3Q13064 507 aaKnown RBP9.89□□□□□ -0.83
VPS50-208ENST00000458707 TERF2Q15554 542 aa9.89□□□□□ -0.83
VPS50-208ENST00000458707 ADALQ6DHV7 355 aa9.89□□□□□ -0.83
VPS50-208ENST00000458707 FBXO38Q6PIJ6 1188 aa9.89□□□□□ -0.83
VPS50-208ENST00000458707 ARHGEF25Q86VW2 580 aa9.89□□□□□ -0.83
VPS50-208ENST00000458707 FSIP1Q8NA03 581 aa9.89□□□□□ -0.83
VPS50-208ENST00000458707 ZNF274Q96GC6 653 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms