RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 ERICH2A1L162 156 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 CCDC69A6NI79 296 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 PCCAP05165 728 aaPredicted RBP13.99□□□□□ -0.17
SMPD4-213ENST00000454468 SLC5A1P13866 664 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 TMEM67Q5HYA8 995 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 USP28Q96RU2 1077 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 MCAMP43121 646 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 HMGN5P82970 282 aaKnown RBP13.99□□□□□ -0.17
SMPD4-213ENST00000454468 MAP3K12Q12852 859 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 CCDC102BQ68D86 513 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 LRP10Q7Z4F1 713 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 WWC3Q9ULE0 1092 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 UQCRHLA0A096LP55 91 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 UQCRHP07919 91 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 ZSCAN25Q6NSZ9 544 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 TSC1Q92574 1164 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 APPBP2Q92624 585 aa13.99□□□□□ -0.17
SMPD4-213ENST00000454468 hCG_1642624A0A1W2PR95 340 aa13.98□□□□□ -0.17
SMPD4-213ENST00000454468 PRDM1O75626 825 aa13.98□□□□□ -0.17
SMPD4-213ENST00000454468 PDIA3P30101 505 aaKnown RBP13.98□□□□□ -0.17
SMPD4-213ENST00000454468 METAP2P50579 478 aaKnown RBP eCLIP13.98□□□□□ -0.17
SMPD4-213ENST00000454468 CASP7P55210 303 aa13.98□□□□□ -0.17
SMPD4-213ENST00000454468 SLC26A6Q9BXS9 759 aa13.98□□□□□ -0.17
SMPD4-213ENST00000454468 KCNQ2O43526 872 aa13.98□□□□□ -0.17
SMPD4-213ENST00000454468 AKAP17AQ02040 695 aaKnown RBP13.98□□□□□ -0.17
SMPD4-213ENST00000454468 NSUN7Q8NE18 718 aaKnown RBP13.98□□□□□ -0.17
SMPD4-213ENST00000454468 UTP14AQ9BVJ6 771 aaKnown RBP13.98□□□□□ -0.17
SMPD4-213ENST00000454468 SLC4A4Q9Y6R1 1079 aa13.98□□□□□ -0.17
SMPD4-213ENST00000454468 GOLGA8AA7E2F4 631 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 PDE8AO60658 829 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 PIH1D3Q9NQM4 214 aaKnown RBP13.97□□□□□ -0.17
SMPD4-213ENST00000454468 COL15A1P39059 1388 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 SH3TC1Q8TE82 1336 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 PRKAB2O43741 272 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 RANBP6O60518 1105 aaKnown RBP13.97□□□□□ -0.17
SMPD4-213ENST00000454468 SMC2O95347 1197 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 DSCC1Q9BVC3 393 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 NOL7Q9UMY1 257 aaKnown RBP13.97□□□□□ -0.17
SMPD4-213ENST00000454468 PTGS1P23219 599 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 SPECC1Q5M775 1068 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 CCDC186Q7Z3E2 898 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 ALG1Q9BT22 464 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 ISCA1Q9BUE6 129 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 MED23Q9ULK4 1368 aa13.97□□□□□ -0.17
SMPD4-213ENST00000454468 ZFYP08048 801 aaPredicted RBP13.96□□□□□ -0.17
SMPD4-213ENST00000454468 CYP7A1P22680 504 aa13.96□□□□□ -0.17
SMPD4-213ENST00000454468 SUSD4Q5VX71 490 aa13.96□□□□□ -0.17
SMPD4-213ENST00000454468 AEBP2Q6ZN18 517 aaPredicted RBP13.96□□□□□ -0.17
SMPD4-213ENST00000454468 PDILTQ8N807 584 aa13.96□□□□□ -0.17
SMPD4-213ENST00000454468 SLC12A7Q9Y666 1083 aa13.96□□□□□ -0.17
SMPD4-213ENST00000454468 FAM208AQ9UK61 1670 aaKnown RBP13.96□□□□□ -0.17
SMPD4-213ENST00000454468 PDE8BO95263 885 aa13.96□□□□□ -0.17
SMPD4-213ENST00000454468 GYG1P46976 350 aa13.96□□□□□ -0.17
SMPD4-213ENST00000454468 DDX19AQ9NUU7 478 aaKnown RBP13.96□□□□□ -0.17
SMPD4-213ENST00000454468 CHD2O14647 1828 aaKnown RBP13.96□□□□□ -0.17
SMPD4-213ENST00000454468 CRKLP46109 303 aaKnown RBP13.96□□□□□ -0.18
SMPD4-213ENST00000454468 FAM200AQ8TCP9 573 aa13.96□□□□□ -0.18
SMPD4-213ENST00000454468 NACAP1Q9BZK3 213 aa13.96□□□□□ -0.18
SMPD4-213ENST00000454468 ZSCAN16Q9H4T2 348 aaPredicted RBP13.96□□□□□ -0.18
SMPD4-213ENST00000454468 PDE6AP16499 860 aa13.95□□□□□ -0.18
SMPD4-213ENST00000454468 PGBD1Q96JS3 809 aa13.95□□□□□ -0.18
SMPD4-213ENST00000454468 CBX8Q9HC52 389 aa13.95□□□□□ -0.18
SMPD4-213ENST00000454468 CYP19A1P11511 503 aaPredicted RBP13.95□□□□□ -0.18
SMPD4-213ENST00000454468 PDIA4P13667 645 aaKnown RBP13.95□□□□□ -0.18
SMPD4-213ENST00000454468 SDR42E1Q8WUS8 393 aa13.95□□□□□ -0.18
SMPD4-213ENST00000454468 UBAC1Q9BSL1 405 aa13.95□□□□□ -0.18
SMPD4-213ENST00000454468 LMTK3Q96Q04 1460 aa13.95□□□□□ -0.18
SMPD4-213ENST00000454468 PFKFB2O60825 505 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 IARSP41252 1262 aaKnown RBP13.94□□□□□ -0.18
SMPD4-213ENST00000454468 CCDC87Q9NVE4 849 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 TFCP2L1Q9NZI6 479 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 TCHHQ07283 1943 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 LOC102724428A0A0B4J2F2 783 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 ZBTB43O43298 467 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 SIK1P57059 783 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 CCDC152Q4G0S7 254 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 MFSD6Q6ZSS7 791 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 SART3Q15020 963 aaKnown RBP13.94□□□□□ -0.18
SMPD4-213ENST00000454468 SAFBQ15424 915 aaKnown RBP eCLIP13.94□□□□□ -0.18
SMPD4-213ENST00000454468 SPATA5Q8NB90 893 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 C16orf45Q96MC5 204 aaPredicted RBP13.94□□□□□ -0.18
SMPD4-213ENST00000454468 SLC4A9Q96Q91 983 aa13.94□□□□□ -0.18
SMPD4-213ENST00000454468 TTF1Q15361 905 aaPredicted RBP13.93□□□□□ -0.18
SMPD4-213ENST00000454468 PUM3Q15397 648 aaKnown RBP13.93□□□□□ -0.18
SMPD4-213ENST00000454468 TRMT1Q9NXH9 659 aaKnown RBP13.93□□□□□ -0.18
SMPD4-213ENST00000454468 CLIP2Q9UDT6 1046 aa13.93□□□□□ -0.18
SMPD4-213ENST00000454468 NRBP1Q9UHY1 535 aa13.93□□□□□ -0.18
SMPD4-213ENST00000454468 WTIPA6NIX2 430 aaPredicted RBP13.93□□□□□ -0.18
SMPD4-213ENST00000454468 CLIC4Q9Y696 253 aa13.93□□□□□ -0.18
SMPD4-213ENST00000454468 RGPD5Q99666 1765 aa13.93□□□□□ -0.18
SMPD4-213ENST00000454468 MED1Q15648 1581 aaPredicted RBP13.93□□□□□ -0.18
SMPD4-213ENST00000454468 LRMPQ12912 555 aa13.93□□□□□ -0.18
SMPD4-213ENST00000454468 SOS2Q07890 1332 aaPredicted RBP13.93□□□□□ -0.18
SMPD4-213ENST00000454468 OVOS2A0A0G2JMS6 1433 aa13.93□□□□□ -0.18
SMPD4-213ENST00000454468 RAD21O60216 631 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 CIAO1O76071 339 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 RESTQ13127 1097 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 NOLC1Q14978 699 aaKnown RBP eCLIP13.92□□□□□ -0.183e-9■□□□□ 10.1
SMPD4-213ENST00000454468 AOPEPQ8N6M6 819 aa13.92□□□□□ -0.18
SMPD4-213ENST00000454468 SENP2Q9HC62 589 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms