RNA–Protein interactions for RNA: ENST00000453341.1

TNFRSF25-208, Transcript of TNF receptor superfamily member 25, human

TSL 1 (best)

Gene TNFRSF25, Length 798 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF25-208	ENST00000453341	ANKRD2	Q9GZV1	360 aa		27.95	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	AOX1	Q06278	1338 aa		27.94	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	IRS2	Q9Y4H2	1338 aa		27.94	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	SNAP23	O00161	211 aa		27.94	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	APAF1	O14727	1248 aa		27.94	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	PPP1R12B	O60237	982 aa	Predicted RBP	27.94	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	PPP2R3B	Q9Y5P8	575 aa		27.94	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	NEXN	Q0ZGT2	675 aa		27.93	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	PTPN18	Q99952	460 aa		27.93	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	CLRN2	A0PK11	232 aa		27.92	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	FXR1	P51114	621 aa	Known RBP eCLIP	27.92	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	CALD1	Q05682	793 aa	Known RBP	27.92	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	CHRND	Q07001	517 aa		27.92	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	NBPF12	Q5TAG4	269 aa	Predicted RBP	27.92	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	PLA2G12B	Q9BX93	195 aa		27.92	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	EFCC1	Q9HA90	598 aa		27.92	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	TRIOBP	Q9H2D6	2365 aa		27.91	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	UNCX	A6NJT0	531 aa		27.91	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	MPHOSPH8	Q99549	860 aa		27.91	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	OTOF	Q9HC10	1997 aa		27.91	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	USP2	O75604	605 aa	Predicted RBP	27.9	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	KCNJ4	P48050	445 aa		27.9	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	CFAP100	Q494V2	611 aa		27.9	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	G2E3	Q7L622	706 aa		27.9	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	PRMT6	Q96LA8	375 aa	Predicted RBP	27.9	■■■□□ 2.06
TNFRSF25-208	ENST00000453341		A0A1B0GUL6	1792 aa		27.89	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	SPDYE2B	A6NHP3	402 aa		27.89	■■■□□ 2.06
TNFRSF25-208	ENST00000453341		F8W031	263 aa	Predicted RBP	27.89	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	CSF1R	P07333	972 aa		27.89	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	SPDYE6	P0CI01	402 aa		27.89	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	CASP7	P55210	303 aa		27.89	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	SP3	Q02447	781 aa		27.89	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	SUPT20HL1	Q3ZLR7	823 aa		27.89	■■■□□ 2.06
TNFRSF25-208	ENST00000453341	SZT2	Q5T011	3432 aa		27.89	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	TESPA1	A2RU30	521 aa	Predicted RBP	27.88	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	IREB2	P48200	963 aa	Known RBP	27.88	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	OTUD7B	Q6GQQ9	843 aa		27.88	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	CHMP4A	Q9BY43	222 aa		27.88	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	VEZT	Q9HBM0	779 aa		27.88	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	TAF5L	O75529	589 aa		27.87	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	DDX10	Q13206	875 aa	Known RBP	27.87	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	GCKR	Q14397	625 aa		27.87	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	C15orf52	Q6ZUT6	534 aa	Known RBP	27.87	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	MYO1B	O43795	1136 aa		27.86	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	ANKRD13A	Q8IZ07	590 aa		27.86	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	HELB	Q8NG08	1087 aa	Predicted RBP	27.86	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	ZNF333	Q96JL9	665 aa		27.86	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	IL1R1	P14778	569 aa		27.85	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	RASA3	Q14644	834 aa		27.85	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	TSR2	Q969E8	191 aa	Known RBP	27.85	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	JAG2	Q9Y219	1238 aa		27.85	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	STK31	Q9BXU1	1019 aa		27.84	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	FKBP1A	P62942	108 aa	Known RBP	27.83	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	OPTN	Q96CV9	577 aa		27.83	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	MS4A4A	Q96JQ5	239 aa		27.83	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	ELP3	Q9H9T3	547 aa		27.83	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	COLQ	Q9Y215	455 aa	Predicted RBP	27.83	■■■□□ 2.05
TNFRSF25-208	ENST00000453341	PTCH2	Q9Y6C5	1203 aa		27.82	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	RANBP2	P49792	3224 aa	Known RBP	27.81	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	CNKSR2	Q8WXI2	1034 aa		27.81	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	TMEM106C	Q9BVX2	250 aa		27.81	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	ANKRD18B	A2A2Z9	1011 aa		27.8	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	SLC4A2	P04920	1241 aa		27.8	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	ZNF804A	Q7Z570	1209 aa		27.8	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	CDAN1	Q8IWY9	1227 aa		27.8	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	BRI3BP	Q8WY22	251 aa		27.8	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	RBM5	P52756	815 aa	Known RBP eCLIP	27.79	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	27.78	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	TEPSIN	Q96N21	525 aa		27.78	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	ZSWIM8	A7E2V4	1837 aa		27.77	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	FLII	Q13045	1269 aa		27.77	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	TAF1C	Q15572	869 aa	Predicted RBP	27.77	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	SPDYE2	Q495Y8	402 aa		27.77	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	SLC9C1	Q4G0N8	1177 aa		27.77	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	MYH16	Q9H6N6	1097 aa		27.77	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	ZNF70	Q9UC06	446 aa	Predicted RBP	27.77	■■■□□ 2.04
TNFRSF25-208	ENST00000453341	FOXO4	P98177	505 aa		27.76	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	TWISTNB	Q3B726	338 aa	Predicted RBP	27.76	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	LINS1	Q8NG48	757 aa		27.76	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	DNAAF4	Q8WXU2	420 aa		27.76	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	CCL15-CCL14	A0A0B4J2E2	113 aa		27.75	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	CCL15	Q16663	113 aa		27.75	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	FAM43A	Q8N2R8	423 aa		27.75	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	TDRD3	Q9H7E2	651 aa	Known RBP	27.75	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	MYC	P01106	439 aa	Predicted RBP	27.74	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	IFIT5	Q13325	482 aa	Known RBP	27.74	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	TNFAIP1	Q13829	316 aa		27.74	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	VGLL4	Q14135	290 aa		27.74	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	SLC4A8	Q2Y0W8	1093 aa		27.74	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	NBPF11	Q86T75	865 aa		27.74	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	ZFYVE28	Q9HCC9	887 aa		27.74	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	FAM205A	Q6ZU69	1335 aa		27.73	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	ARAP2	Q8WZ64	1704 aa		27.73	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	PRKRIP1	Q9H875	184 aa	Predicted RBP	27.73	■■■□□ 2.03
TNFRSF25-208	ENST00000453341		H0YGN5	161 aa		27.72	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	GTF2A2	P52657	109 aa		27.72	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	FKBP5	Q13451	457 aa	Predicted RBP	27.72	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	27.72	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	ARHGAP39	Q9C0H5	1083 aa		27.72	■■■□□ 2.03
TNFRSF25-208	ENST00000453341	TMEM39B	Q9GZU3	492 aa		27.72	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms