RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 PSMD1Q99460 953 aa17.76■□□□□ 0.43
TNF-208ENST00000449264 CD209Q9NNX6 404 aa17.76■□□□□ 0.43
TNF-208ENST00000449264 ZNF277Q9NRM2 450 aaPredicted RBP17.76■□□□□ 0.43
TNF-208ENST00000449264 DENND2AQ9ULE3 1009 aa17.76■□□□□ 0.43
TNF-208ENST00000449264 DOCK2Q92608 1830 aa17.76■□□□□ 0.43
TNF-208ENST00000449264 SEMA3EO15041 775 aa17.75■□□□□ 0.43
TNF-208ENST00000449264 CDC45O75419 566 aa17.75■□□□□ 0.43
TNF-208ENST00000449264 TAOK3Q9H2K8 898 aa17.75■□□□□ 0.43
TNF-208ENST00000449264 DBNDD1Q9H9R9 158 aa17.75■□□□□ 0.43
TNF-208ENST00000449264 CYP2E1P05181 493 aaPredicted RBP17.74■□□□□ 0.43
TNF-208ENST00000449264 C8orf34Q49A92 452 aa17.74■□□□□ 0.43
TNF-208ENST00000449264 COA1Q9GZY4 146 aa17.74■□□□□ 0.43
TNF-208ENST00000449264 KIAA2012Q0VF49 1180 aa17.74■□□□□ 0.43
TNF-208ENST00000449264 TBC1D9Q6ZT07 1266 aa17.74■□□□□ 0.43
TNF-208ENST00000449264 KBTBD3Q8NAB2 608 aa17.74■□□□□ 0.43
TNF-208ENST00000449264 TDRD7Q8NHU6 1098 aaKnown RBP17.74■□□□□ 0.43
TNF-208ENST00000449264 NFKBIEO00221 500 aa17.73■□□□□ 0.43
TNF-208ENST00000449264 IL1R1P14778 569 aa17.73■□□□□ 0.43
TNF-208ENST00000449264 TTF1Q15361 905 aaPredicted RBP17.73■□□□□ 0.43
TNF-208ENST00000449264 FBXW7Q969H0 707 aa17.73■□□□□ 0.43
TNF-208ENST00000449264 PIH1D3Q9NQM4 214 aaKnown RBP17.73■□□□□ 0.43
TNF-208ENST00000449264 SCN9AQ15858 1988 aa17.72■□□□□ 0.43
TNF-208ENST00000449264 CCDC88AQ3V6T2 1871 aa17.72■□□□□ 0.43
TNF-208ENST00000449264 ECE2O60344 883 aa17.72■□□□□ 0.43
TNF-208ENST00000449264 IDH1O75874 414 aaKnown RBP17.72■□□□□ 0.43
TNF-208ENST00000449264 RASSF7Q02833 373 aa17.72■□□□□ 0.43
TNF-208ENST00000449264 CASC1Q6TDU7 716 aa17.72■□□□□ 0.43
TNF-208ENST00000449264 LARGE2Q8N3Y3 721 aa17.72■□□□□ 0.43
TNF-208ENST00000449264 ABCF2Q9UG63 623 aa17.72■□□□□ 0.43
TNF-208ENST00000449264 DIAPH3Q9NSV4 1193 aa17.71■□□□□ 0.43
TNF-208ENST00000449264 COL4A5P29400 1685 aa17.71■□□□□ 0.43
TNF-208ENST00000449264 PDS5AQ29RF7 1337 aaKnown RBP17.71■□□□□ 0.43
TNF-208ENST00000449264 IARSP41252 1262 aaKnown RBP17.71■□□□□ 0.42
TNF-208ENST00000449264 MAST2Q6P0Q8 1798 aa17.7■□□□□ 0.42
TNF-208ENST00000449264 RFX7Q2KHR2 1363 aa17.7■□□□□ 0.42
TNF-208ENST00000449264 CHGBP05060 677 aa17.7■□□□□ 0.42
TNF-208ENST00000449264 CHMLP26374 656 aa17.7■□□□□ 0.42
TNF-208ENST00000449264 GTF2IP78347 998 aa17.7■□□□□ 0.42
TNF-208ENST00000449264 LRP2BPQ9P2M1 347 aa17.7■□□□□ 0.42
TNF-208ENST00000449264 YBX3P16989 372 aaKnown RBP eCLIP17.69■□□□□ 0.42
TNF-208ENST00000449264 CWC27Q6UX04 472 aaKnown RBP17.69■□□□□ 0.42
TNF-208ENST00000449264 ARHGAP27Q6ZUM4 889 aa17.69■□□□□ 0.42
TNF-208ENST00000449264 WDR66Q8TBY9 1149 aa17.69■□□□□ 0.42
TNF-208ENST00000449264 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.69■□□□□ 0.42
TNF-208ENST00000449264 HIP1O00291 1037 aa17.68■□□□□ 0.42
TNF-208ENST00000449264 SLFNL1Q499Z3 407 aa17.68■□□□□ 0.42
TNF-208ENST00000449264 PODNQ7Z5L7 613 aa17.68■□□□□ 0.42
TNF-208ENST00000449264 RAI14Q9P0K7 980 aa17.68■□□□□ 0.42
TNF-208ENST00000449264 ZNF646O15015 1829 aaPredicted RBP17.68■□□□□ 0.42
TNF-208ENST00000449264 PSME4Q14997 1843 aa17.68■□□□□ 0.42
TNF-208ENST00000449264 LTBP3Q9NS15 1303 aa17.68■□□□□ 0.42
TNF-208ENST00000449264 ZBTB22O15209 634 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 MAP3K12Q12852 859 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 NMIQ13287 307 aaPredicted RBP17.67■□□□□ 0.42
TNF-208ENST00000449264 LRRFIP1Q32MZ4 808 aaKnown RBP17.67■□□□□ 0.42
TNF-208ENST00000449264 NIM1KQ8IY84 436 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 FAM227BQ96M60 508 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 BACH2Q9BYV9 841 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 KCNQ5Q9NR82 932 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 A0A0D9SFI3 127 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 RNF113AO15541 343 aaKnown RBP17.67■□□□□ 0.42
TNF-208ENST00000449264 PRDX5P30044 214 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 MFSD14BQ5SR56 506 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 SLC9C2Q5TAH2 1124 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 TTLL5Q6EMB2 1281 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 ERICH6Q7L0X2 663 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 ZGPATQ8N5A5 531 aaKnown RBP17.67■□□□□ 0.42
TNF-208ENST00000449264 VPS33BQ9H267 617 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 FAM205AQ6ZU69 1335 aa17.67■□□□□ 0.42
TNF-208ENST00000449264 SALL1Q9NSC2 1324 aa17.66■□□□□ 0.42
TNF-208ENST00000449264 YDJCA8MPS7 323 aa17.66■□□□□ 0.42
TNF-208ENST00000449264 PDE6AP16499 860 aa17.66■□□□□ 0.42
TNF-208ENST00000449264 ZSCAN25Q6NSZ9 544 aa17.66■□□□□ 0.42
TNF-208ENST00000449264 MAGEB6Q8N7X4 407 aa17.66■□□□□ 0.42
TNF-208ENST00000449264 SBF1O95248 1867 aa17.66■□□□□ 0.42
TNF-208ENST00000449264 ZFYP08048 801 aaPredicted RBP17.65■□□□□ 0.42
TNF-208ENST00000449264 MFAP1P55081 439 aaKnown RBP17.65■□□□□ 0.42
TNF-208ENST00000449264 TBC1D22AQ8WUA7 517 aa17.65■□□□□ 0.42
TNF-208ENST00000449264 JDP2Q8WYK2 163 aa17.65■□□□□ 0.42
TNF-208ENST00000449264 ESYT1Q9BSJ8 1104 aa17.65■□□□□ 0.42
TNF-208ENST00000449264 MXD3Q9BW11 206 aa17.65■□□□□ 0.42
TNF-208ENST00000449264 IL25Q9H293 177 aa17.65■□□□□ 0.42
TNF-208ENST00000449264 DICER1Q9UPY3 1922 aaKnown RBP17.65■□□□□ 0.42
TNF-208ENST00000449264 ZNF532Q9HCE3 1301 aa17.65■□□□□ 0.42
TNF-208ENST00000449264 SEC24BO95487 1268 aa17.64■□□□□ 0.42
TNF-208ENST00000449264 LDHBP07195 334 aaKnown RBP17.64■□□□□ 0.42
TNF-208ENST00000449264 ADD2P35612 726 aa17.64■□□□□ 0.42
TNF-208ENST00000449264 PRELPP51888 382 aa17.64■□□□□ 0.42
TNF-208ENST00000449264 GRIK5Q16478 980 aa17.64■□□□□ 0.42
TNF-208ENST00000449264 GPR162Q16538 588 aa17.64■□□□□ 0.42
TNF-208ENST00000449264 SPTY2D1Q68D10 685 aaPredicted RBP17.64■□□□□ 0.42
TNF-208ENST00000449264 DZIP1Q86YF9 867 aaKnown RBP17.64■□□□□ 0.42
TNF-208ENST00000449264 RUFY2Q8WXA3 655 aa17.64■□□□□ 0.42
TNF-208ENST00000449264 USP17L3A6NCW0 530 aa17.64■□□□□ 0.41
TNF-208ENST00000449264 USP17L4A6NCW7 530 aa17.64■□□□□ 0.41
TNF-208ENST00000449264 USP17L1Q7RTZ2 530 aa17.64■□□□□ 0.41
TNF-208ENST00000449264 SEC62Q99442 399 aaKnown RBP17.64■□□□□ 0.41
TNF-208ENST00000449264 ZNRF3Q9ULT6 936 aa17.64■□□□□ 0.41
TNF-208ENST00000449264 MYH2Q9UKX2 1941 aa17.64■□□□□ 0.41
TNF-208ENST00000449264 RAD17O75943 681 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms