RNA–Protein interactions for RNA: ENST00000449049.7

SHMT2-203, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 2,121 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-203ENST00000449049 EDC3Q96F86 508 aaKnown RBP17.08■□□□□ 0.33
SHMT2-203ENST00000449049 COL4A5P29400 1685 aa17.08■□□□□ 0.32
SHMT2-203ENST00000449049 GOLIM4O00461 696 aa17.08■□□□□ 0.32
SHMT2-203ENST00000449049 PPIP5K2O43314 1243 aa17.08■□□□□ 0.32
SHMT2-203ENST00000449049 CYP2E1P05181 493 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-203ENST00000449049 RILPL2Q969X0 211 aa17.08■□□□□ 0.32
SHMT2-203ENST00000449049 ZNF277Q9NRM2 450 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-203ENST00000449049 DOK7Q18PE1 504 aa17.07■□□□□ 0.32
SHMT2-203ENST00000449049 ANTXR1Q9H6X2 564 aa17.07■□□□□ 0.32
SHMT2-203ENST00000449049 ZNF646O15015 1829 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-203ENST00000449049 FRAT2O75474 233 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-203ENST00000449049 YBX3P16989 372 aaKnown RBP eCLIP17.06■□□□□ 0.327e-8■□□□□ 9
SHMT2-203ENST00000449049 IARSP41252 1262 aaKnown RBP17.06■□□□□ 0.32
SHMT2-203ENST00000449049 TTF1Q15361 905 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-203ENST00000449049 ERICH6Q7L0X2 663 aa17.06■□□□□ 0.32
SHMT2-203ENST00000449049 PODNQ7Z5L7 613 aa17.06■□□□□ 0.32
SHMT2-203ENST00000449049 RFX7Q2KHR2 1363 aa17.06■□□□□ 0.32
SHMT2-203ENST00000449049 KBTBD3Q8NAB2 608 aa17.06■□□□□ 0.32
SHMT2-203ENST00000449049 CHD4Q14839 1912 aa17.06■□□□□ 0.32
SHMT2-203ENST00000449049 ECE2O60344 883 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 TICAM2Q86XR7 235 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 DBNDD1Q9H9R9 158 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 FAM205AQ6ZU69 1335 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 SALL1Q9NSC2 1324 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 PSME4Q14997 1843 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 G3V3G9 751 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 RASSF7Q02833 373 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 DCAF8Q5TAQ9 597 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 LARGE2Q8N3Y3 721 aa17.05■□□□□ 0.32
SHMT2-203ENST00000449049 PIH1D3Q9NQM4 214 aaKnown RBP17.05■□□□□ 0.32
SHMT2-203ENST00000449049 FSD1Q9BTV5 496 aa17.04■□□□□ 0.32
SHMT2-203ENST00000449049 MAST2Q6P0Q8 1798 aa17.04■□□□□ 0.32
SHMT2-203ENST00000449049 CDC45O75419 566 aa17.03■□□□□ 0.32
SHMT2-203ENST00000449049 PRELPP51888 382 aa17.03■□□□□ 0.32
SHMT2-203ENST00000449049 CHAF1AQ13111 956 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-203ENST00000449049 WDR66Q8TBY9 1149 aa17.03■□□□□ 0.32
SHMT2-203ENST00000449049 MYO5AQ9Y4I1 1855 aaKnown RBP17.03■□□□□ 0.32
SHMT2-203ENST00000449049 MYH7P12883 1935 aa17.03■□□□□ 0.32
SHMT2-203ENST00000449049 SCN9AQ15858 1988 aa17.03■□□□□ 0.32
SHMT2-203ENST00000449049 TBC1D9Q6ZT07 1266 aa17.03■□□□□ 0.32
SHMT2-203ENST00000449049 ARHGAP27Q6ZUM4 889 aa17.03■□□□□ 0.32
SHMT2-203ENST00000449049 YDJCA8MPS7 323 aa17.02■□□□□ 0.32
SHMT2-203ENST00000449049 C8orf34Q49A92 452 aa17.02■□□□□ 0.32
SHMT2-203ENST00000449049 ZGPATQ8N5A5 531 aaKnown RBP17.02■□□□□ 0.32
SHMT2-203ENST00000449049 GTF2IP78347 998 aa17.02■□□□□ 0.31
SHMT2-203ENST00000449049 NIM1KQ8IY84 436 aa17.02■□□□□ 0.31
SHMT2-203ENST00000449049 JAG2Q9Y219 1238 aa17.02■□□□□ 0.31
SHMT2-203ENST00000449049 IGSF3O75054 1194 aa17.01■□□□□ 0.31
SHMT2-203ENST00000449049 CHMLP26374 656 aa17.01■□□□□ 0.31
SHMT2-203ENST00000449049 TBC1D22AQ8WUA7 517 aa17.01■□□□□ 0.31
SHMT2-203ENST00000449049 ZNRF3Q9ULT6 936 aa17.01■□□□□ 0.31
SHMT2-203ENST00000449049 SBF1O95248 1867 aa17.01■□□□□ 0.31
SHMT2-203ENST00000449049 CCDC88AQ3V6T2 1871 aa17.01■□□□□ 0.31
SHMT2-203ENST00000449049 DICER1Q9UPY3 1922 aaKnown RBP17.01■□□□□ 0.31
SHMT2-203ENST00000449049 HIP1O00291 1037 aa17■□□□□ 0.31
SHMT2-203ENST00000449049 STRIP1Q5VSL9 837 aa17■□□□□ 0.31
SHMT2-203ENST00000449049 TTLL5Q6EMB2 1281 aa17■□□□□ 0.31
SHMT2-203ENST00000449049 DDX24Q9GZR7 859 aaKnown RBP eCLIP17■□□□□ 0.316e-7■■□□□ 14.2
SHMT2-203ENST00000449049 KCNQ5Q9NR82 932 aa17■□□□□ 0.31
SHMT2-203ENST00000449049 ABCF2Q9UG63 623 aa17■□□□□ 0.31
SHMT2-203ENST00000449049 IDH1O75874 414 aaKnown RBP17■□□□□ 0.31
SHMT2-203ENST00000449049 FKBP1AP62942 108 aaKnown RBP17■□□□□ 0.31
SHMT2-203ENST00000449049 LRRFIP1Q32MZ4 808 aaKnown RBP17■□□□□ 0.31
SHMT2-203ENST00000449049 USP17L3A6NCW0 530 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 USP17L4A6NCW7 530 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 ZFYP08048 801 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-203ENST00000449049 LMNB1P20700 586 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 MAP3K12Q12852 859 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 GPR162Q16538 588 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 MFSD14BQ5SR56 506 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 SPTY2D1Q68D10 685 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-203ENST00000449049 ZSCAN25Q6NSZ9 544 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 USP17L1Q7RTZ2 530 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 JDP2Q8WYK2 163 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 LRP2BPQ9P2M1 347 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 RNF113AO15541 343 aaKnown RBP16.99■□□□□ 0.31
SHMT2-203ENST00000449049 ADD2P35612 726 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 DACT2Q5SW24 774 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 CASC1Q6TDU7 716 aa16.99■□□□□ 0.31
SHMT2-203ENST00000449049 PDE6AP16499 860 aa16.98■□□□□ 0.31
SHMT2-203ENST00000449049 PRDX5P30044 214 aa16.98■□□□□ 0.31
SHMT2-203ENST00000449049 FBXW7Q969H0 707 aa16.98■□□□□ 0.31
SHMT2-203ENST00000449049 DIAPH3Q9NSV4 1193 aa16.98■□□□□ 0.31
SHMT2-203ENST00000449049 SUGT1Q9Y2Z0 365 aa16.98■□□□□ 0.31
SHMT2-203ENST00000449049 CHGBP05060 677 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 UBE3CQ15386 1083 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 GRIK5Q16478 980 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 SLC9C2Q5TAH2 1124 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 TMED8Q6PL24 325 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-203ENST00000449049 CERS5Q8N5B7 392 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 RAI14Q9P0K7 980 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 TIAM2Q8IVF5 1701 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 TCRBV5S4A2TA0A5A2 114 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 GRIN3BO60391 1043 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 LDHBP07195 334 aaKnown RBP16.97■□□□□ 0.31
SHMT2-203ENST00000449049 NMIQ13287 307 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-203ENST00000449049 ZMYM1Q5SVZ6 1142 aa16.97■□□□□ 0.31
SHMT2-203ENST00000449049 NSUN4Q96CB9 384 aaKnown RBP16.97■□□□□ 0.31
SHMT2-203ENST00000449049 FZD9O00144 591 aa16.96■□□□□ 0.31
SHMT2-203ENST00000449049 MECOMQ03112 1051 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms