RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL28A1-204ENST00000444268 STK32BQ9NY57 414 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 KIF3AQ9Y496 699 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 DDX60Q8IY21 1712 aaKnown RBP15.16■□□□□ 0.02
COL28A1-204ENST00000444268 TCHHQ07283 1943 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 LAMA4Q16363 1823 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 MAST3O60307 1309 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 VPS37CA5D8V6 355 aaPredicted RBP15.16■□□□□ 0.02
COL28A1-204ENST00000444268 ITGA6P23229 1130 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 FGD1P98174 961 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 TTF1Q15361 905 aaPredicted RBP15.16■□□□□ 0.02
COL28A1-204ENST00000444268 DHX32Q7L7V1 743 aaKnown RBP15.16■□□□□ 0.02
COL28A1-204ENST00000444268 CCDC125Q86Z20 511 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 NECAB1Q8N987 351 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 GTF3C6Q969F1 213 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 LLPHQ9BRT6 129 aaKnown RBP15.16■□□□□ 0.02
COL28A1-204ENST00000444268 RBM27Q9P2N5 1060 aaKnown RBP15.16■□□□□ 0.02
COL28A1-204ENST00000444268 RIPOR2Q9Y4F9 1068 aa15.16■□□□□ 0.02
COL28A1-204ENST00000444268 ARAP2Q8WZ64 1704 aa15.15■□□□□ 0.02
COL28A1-204ENST00000444268 MSL1Q68DK7 614 aa15.15■□□□□ 0.02
COL28A1-204ENST00000444268 RTN4Q9NQC3 1192 aaKnown RBP15.15■□□□□ 0.02
COL28A1-204ENST00000444268 CNNM1Q9NRU3 951 aa15.15■□□□□ 0.02
COL28A1-204ENST00000444268 MROH5Q6ZUA9 1318 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 SYCE3A1L190 88 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 HSPD1P10809 573 aaKnown RBP15.14■□□□□ 0.01
COL28A1-204ENST00000444268 HMGB2P26583 209 aaKnown RBP15.14■□□□□ 0.01
COL28A1-204ENST00000444268 KRT85P78386 507 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 FKBP4Q02790 459 aaKnown RBP eCLIP15.14■□□□□ 0.01
COL28A1-204ENST00000444268 CCDC183Q5T5S1 534 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 Q6ZUG5 572 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 C3orf67Q6ZVT6 689 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 ILDR2Q71H61 639 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 NBPF5PQ86XG9 351 aaPredicted RBP15.14■□□□□ 0.01
COL28A1-204ENST00000444268 FAM184AQ8NB25 1140 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 APPBP2Q92624 585 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 CHAMP1Q96JM3 812 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 CNPY2Q9Y2B0 182 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 TAF6LQ9Y6J9 622 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 LAMB2P55268 1798 aa15.14■□□□□ 0.01
COL28A1-204ENST00000444268 TM4SF1P30408 202 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 DDR1Q08345 913 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 GREM2Q9H772 168 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 ELP1O95163 1332 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 UQCRFS1P1P0C7P4 283 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 FOXD4L6Q3SYB3 417 aaPredicted RBP15.13■□□□□ 0.01
COL28A1-204ENST00000444268 FOXD4L3Q6VB84 417 aaPredicted RBP15.13■□□□□ 0.01
COL28A1-204ENST00000444268 FBXL16Q8N461 479 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 AGXT2Q9BYV1 514 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 TSPY26PQ9H489 355 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 NSFL1CQ9UNZ2 370 aaKnown RBP15.13■□□□□ 0.01
COL28A1-204ENST00000444268 CARMIL3Q8ND23 1372 aa15.13■□□□□ 0.01
COL28A1-204ENST00000444268 PDE8BO95263 885 aa15.12■□□□□ 0.01
COL28A1-204ENST00000444268 HMGN5P82970 282 aaKnown RBP15.12■□□□□ 0.01
COL28A1-204ENST00000444268 IMMTQ16891 758 aaKnown RBP15.12■□□□□ 0.01
COL28A1-204ENST00000444268 FLAD1Q8NFF5 587 aa15.12■□□□□ 0.01
COL28A1-204ENST00000444268 TCEANC2Q96MN5 208 aa15.12■□□□□ 0.01
COL28A1-204ENST00000444268 SCAND2PQ9GZW5 306 aaPredicted RBP15.12■□□□□ 0.01
COL28A1-204ENST00000444268 GDPD2Q9HCC8 539 aa15.12■□□□□ 0.01
COL28A1-204ENST00000444268 COL4A1P02462 1669 aa15.12■□□□□ 0.01
COL28A1-204ENST00000444268 CASZ1Q86V15 1759 aa15.12■□□□□ 0.01
COL28A1-204ENST00000444268 FIBPO43427 364 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 PFKFB2O60825 505 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 GADD45BO75293 160 aaPredicted RBP15.11■□□□□ 0.01
COL28A1-204ENST00000444268 GTF2E1P29083 439 aaPredicted RBP15.11■□□□□ 0.01
COL28A1-204ENST00000444268 ADORA1P30542 326 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 WASHC4Q2M389 1173 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 HS1BP3Q53T59 392 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 RBSNQ9H1K0 784 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 QSER1Q2KHR3 1735 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 TNRC6CQ9HCJ0 1690 aaKnown RBP15.11■□□□□ 0.01
COL28A1-204ENST00000444268 RTL9Q8NET4 1388 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 E7EWF7 191 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 POLRMTO00411 1230 aaKnown RBP15.11■□□□□ 0.01
COL28A1-204ENST00000444268 SERPINB2P05120 415 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 DNM1Q05193 864 aaKnown RBP15.11■□□□□ 0.01
COL28A1-204ENST00000444268 PUM3Q15397 648 aaKnown RBP15.11■□□□□ 0.01
COL28A1-204ENST00000444268 VGLL2Q8N8G2 317 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 BRF1Q92994 677 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 ZSCAN16Q9H4T2 348 aaPredicted RBP15.11■□□□□ 0.01
COL28A1-204ENST00000444268 AKAP11Q9UKA4 1901 aa15.11■□□□□ 0.01
COL28A1-204ENST00000444268 M0R2C6 588 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 ZAP70P43403 619 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 EXOSC10Q01780 885 aaKnown RBP15.1■□□□□ 0.01
COL28A1-204ENST00000444268 PRR5LQ6MZQ0 368 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 TPTE2Q6XPS3 522 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 LPIN2Q92539 896 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 OSBP2Q969R2 916 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 ZNF274Q96GC6 653 aaPredicted RBP15.1■□□□□ 0.01
COL28A1-204ENST00000444268 NYXQ9GZU5 481 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 SEC31BQ9NQW1 1179 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 WDR19Q8NEZ3 1342 aa15.1■□□□□ 0.01
COL28A1-204ENST00000444268 ESPNB1AK53 854 aa15.09■□□□□ 0.01
COL28A1-204ENST00000444268 NPHP1O15259 732 aa15.09■□□□□ 0.01
COL28A1-204ENST00000444268 CHGBP05060 677 aa15.09■□□□□ 0.01
COL28A1-204ENST00000444268 STK3Q13188 491 aa15.09■□□□□ 0.01
COL28A1-204ENST00000444268 STOX1Q6ZVD7 989 aa15.09■□□□□ 0.01
COL28A1-204ENST00000444268 CDC37L1Q7L3B6 337 aa15.09■□□□□ 0.01
COL28A1-204ENST00000444268 SMARCC2Q8TAQ2 1214 aa15.09■□□□□ 0.01
COL28A1-204ENST00000444268 MMP10P09238 476 aa15.08■□□□□ 0.01
COL28A1-204ENST00000444268 ARID4AP29374 1257 aaPredicted RBP15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms