RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 HMG20BQ9P0W2 317 aa19.25■□□□□ 0.67
USP40-206ENST00000443711 PDS5AQ29RF7 1337 aaKnown RBP19.25■□□□□ 0.67
USP40-206ENST00000443711 FAM205AQ6ZU69 1335 aa19.25■□□□□ 0.67
USP40-206ENST00000443711 YDJCA8MPS7 323 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 FZD9O00144 591 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 MCAMP43121 646 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 EIF6P56537 245 aaKnown RBP19.24■□□□□ 0.67
USP40-206ENST00000443711 GTF2IP78347 998 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 CHAF1AQ13111 956 aaPredicted RBP19.24■□□□□ 0.67
USP40-206ENST00000443711 SCARF1Q14162 830 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 TSHZ3Q63HK5 1081 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 TTLL5Q6EMB2 1281 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 PI4K2BQ8TCG2 481 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 BOLA2Q9H3K6 86 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 SNRKQ9NRH2 765 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 SCN9AQ15858 1988 aa19.24■□□□□ 0.67
USP40-206ENST00000443711 PSME4Q14997 1843 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 USP17L3A6NCW0 530 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 USP17L4A6NCW7 530 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 TNIP1Q15025 636 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 STRIP1Q5VSL9 837 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 USP17L1Q7RTZ2 530 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 WDR66Q8TBY9 1149 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 FBXW7Q969H0 707 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 HAUS7Q99871 368 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 KCNQ5Q9NR82 932 aa19.23■□□□□ 0.67
USP40-206ENST00000443711 ZAP70P43403 619 aa19.22■□□□□ 0.67
USP40-206ENST00000443711 RGS3P49796 1198 aa19.22■□□□□ 0.67
USP40-206ENST00000443711 CXCL9Q07325 125 aa19.22■□□□□ 0.67
USP40-206ENST00000443711 CIAPIN1Q6FI81 312 aa19.22■□□□□ 0.67
USP40-206ENST00000443711 TBC1D22AQ8WUA7 517 aa19.22■□□□□ 0.67
USP40-206ENST00000443711 RAD17O75943 681 aa19.21■□□□□ 0.67
USP40-206ENST00000443711 PI16Q6UXB8 463 aa19.21■□□□□ 0.67
USP40-206ENST00000443711 SKAP1Q86WV1 359 aa19.21■□□□□ 0.67
USP40-206ENST00000443711 TIAM2Q8IVF5 1701 aa19.21■□□□□ 0.67
USP40-206ENST00000443711 DNAJC2Q99543 621 aaKnown RBP19.21■□□□□ 0.67
USP40-206ENST00000443711 ZC3H4Q9UPT8 1303 aaKnown RBP19.21■□□□□ 0.67
USP40-206ENST00000443711 VIL1P09327 827 aaKnown RBP19.2■□□□□ 0.66
USP40-206ENST00000443711 FKBP1AP62942 108 aaKnown RBP19.2■□□□□ 0.66
USP40-206ENST00000443711 DACT2Q5SW24 774 aa19.2■□□□□ 0.66
USP40-206ENST00000443711 ZGPATQ8N5A5 531 aaKnown RBP19.2■□□□□ 0.66
USP40-206ENST00000443711 JAG2Q9Y219 1238 aa19.2■□□□□ 0.66
USP40-206ENST00000443711 COL1A1P02452 1464 aaPredicted RBP19.2■□□□□ 0.66
USP40-206ENST00000443711 PSMD14O00487 310 aa19.19■□□□□ 0.66
USP40-206ENST00000443711 CYP2E1P05181 493 aaPredicted RBP19.19■□□□□ 0.66
USP40-206ENST00000443711 TTF1Q15361 905 aaPredicted RBP19.19■□□□□ 0.66
USP40-206ENST00000443711 SPTY2D1Q68D10 685 aaPredicted RBP19.19■□□□□ 0.66
USP40-206ENST00000443711 PAG1Q9NWQ8 432 aa19.19■□□□□ 0.66
USP40-206ENST00000443711 SALL1Q9NSC2 1324 aa19.19■□□□□ 0.66
USP40-206ENST00000443711 GOLGB1Q14789 3259 aaKnown RBP19.19■□□□□ 0.66
USP40-206ENST00000443711 GOLIM4O00461 696 aa19.18■□□□□ 0.66
USP40-206ENST00000443711 MFSD14BQ5SR56 506 aa19.18■□□□□ 0.66
USP40-206ENST00000443711 TTC22Q5TAA0 569 aa19.18■□□□□ 0.66
USP40-206ENST00000443711 ABCF2Q9UG63 623 aa19.18■□□□□ 0.66
USP40-206ENST00000443711 NDUFB9Q9Y6M9 179 aa19.18■□□□□ 0.66
USP40-206ENST00000443711 MYO3BQ8WXR4 1341 aa19.18■□□□□ 0.66
USP40-206ENST00000443711 ZNF541Q9H0D2 1346 aa19.18■□□□□ 0.66
USP40-206ENST00000443711 ZNF646O15015 1829 aaPredicted RBP19.18■□□□□ 0.66
USP40-206ENST00000443711 DPY19L2Q6NUT2 758 aa19.17■□□□□ 0.66
USP40-206ENST00000443711 RSBN1LQ6PCB5 846 aaPredicted RBP19.17■□□□□ 0.66
USP40-206ENST00000443711 TBC1D9Q6ZT07 1266 aa19.17■□□□□ 0.66
USP40-206ENST00000443711 SUGT1Q9Y2Z0 365 aa19.17■□□□□ 0.66
USP40-206ENST00000443711 GJA3Q9Y6H8 435 aa19.17■□□□□ 0.66
USP40-206ENST00000443711 MAP4K4O95819 1239 aaPredicted RBP19.16■□□□□ 0.66
USP40-206ENST00000443711 ERICH6Q7L0X2 663 aa19.16■□□□□ 0.66
USP40-206ENST00000443711 GPC2Q8N158 579 aa19.16■□□□□ 0.66
USP40-206ENST00000443711 CERS5Q8N5B7 392 aa19.16■□□□□ 0.66
USP40-206ENST00000443711 AGBL3Q8NEM8 1001 aa19.16■□□□□ 0.66
USP40-206ENST00000443711 EDC3Q96F86 508 aaKnown RBP19.16■□□□□ 0.66
USP40-206ENST00000443711 ANTXR1Q9H6X2 564 aa19.16■□□□□ 0.66
USP40-206ENST00000443711 PIH1D3Q9NQM4 214 aaKnown RBP19.16■□□□□ 0.66
USP40-206ENST00000443711 LRP2BPQ9P2M1 347 aa19.16■□□□□ 0.66
USP40-206ENST00000443711 MYO5AQ9Y4I1 1855 aaKnown RBP19.16■□□□□ 0.66
USP40-206ENST00000443711 TRIM6-TRIM34B2RNG4 842 aa19.15■□□□□ 0.66
USP40-206ENST00000443711 IGSF3O75054 1194 aa19.15■□□□□ 0.66
USP40-206ENST00000443711 LDHBP07195 334 aaKnown RBP19.15■□□□□ 0.66
USP40-206ENST00000443711 RPS12P25398 132 aaKnown RBP19.15■□□□□ 0.66
USP40-206ENST00000443711 EVI5LQ96CN4 794 aa19.15■□□□□ 0.66
USP40-206ENST00000443711 MXD3Q9BW11 206 aa19.15■□□□□ 0.66
USP40-206ENST00000443711 AK9Q5TCS8 1911 aa19.15■□□□□ 0.66
USP40-206ENST00000443711 CNTROBQ8N137 903 aa19.14■□□□□ 0.65
USP40-206ENST00000443711 RILPL2Q969X0 211 aa19.14■□□□□ 0.65
USP40-206ENST00000443711 GMLQ99445 158 aa19.14■□□□□ 0.65
USP40-206ENST00000443711 RAI14Q9P0K7 980 aa19.14■□□□□ 0.65
USP40-206ENST00000443711 DOCK2Q92608 1830 aa19.14■□□□□ 0.65
USP40-206ENST00000443711 IDH1O75874 414 aaKnown RBP19.13■□□□□ 0.65
USP40-206ENST00000443711 GSPT1P15170 499 aaKnown RBP19.13■□□□□ 0.65
USP40-206ENST00000443711 PRDX5P30044 214 aa19.13■□□□□ 0.65
USP40-206ENST00000443711 MAP3K12Q12852 859 aa19.13■□□□□ 0.65
USP40-206ENST00000443711 KBTBD3Q8NAB2 608 aa19.13■□□□□ 0.65
USP40-206ENST00000443711 ZBTB12Q9Y330 459 aaPredicted RBP19.13■□□□□ 0.65
USP40-206ENST00000443711 MYH7P12883 1935 aa19.12■□□□□ 0.65
USP40-206ENST00000443711 MAST3O60307 1309 aa19.12■□□□□ 0.65
USP40-206ENST00000443711 GLTPD2A6NH11 291 aa19.12■□□□□ 0.65
USP40-206ENST00000443711 DDNO94850 711 aaPredicted RBP19.12■□□□□ 0.65
USP40-206ENST00000443711 GMPSP49915 693 aaPredicted RBP19.12■□□□□ 0.65
USP40-206ENST00000443711 MMP14P50281 582 aa19.12■□□□□ 0.65
USP40-206ENST00000443711 GRIK5Q16478 980 aa19.12■□□□□ 0.65
USP40-206ENST00000443711 LRRFIP1Q32MZ4 808 aaKnown RBP19.12■□□□□ 0.65
USP40-206ENST00000443711 BMP2KLQ5H9B9 411 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms