RNA–Protein interactions for RNA: ENST00000439724.7

SMAD3-202, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,530 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-202ENST00000439724 NECAB1Q8N987 351 aa13.98□□□□□ -0.17
SMAD3-202ENST00000439724 FOXD4L4Q8WXT5 416 aaPredicted RBP13.98□□□□□ -0.17
SMAD3-202ENST00000439724 GZF1Q9H116 711 aaPredicted RBP13.98□□□□□ -0.17
SMAD3-202ENST00000439724 ISY1Q9ULR0 285 aaKnown RBP13.98□□□□□ -0.17
SMAD3-202ENST00000439724 DDX49Q9Y6V7 483 aaKnown RBP13.98□□□□□ -0.17
SMAD3-202ENST00000439724 ZNF804BA4D1E1 1349 aa13.97□□□□□ -0.17
SMAD3-202ENST00000439724 SNAP23O00161 211 aa13.97□□□□□ -0.17
SMAD3-202ENST00000439724 L1TD1Q5T7N2 865 aaKnown RBP13.97□□□□□ -0.17
SMAD3-202ENST00000439724 GTF3C6Q969F1 213 aa13.97□□□□□ -0.17
SMAD3-202ENST00000439724 NLRP3Q96P20 1036 aa13.97□□□□□ -0.17
SMAD3-202ENST00000439724 TNRC6CQ9HCJ0 1690 aaKnown RBP13.97□□□□□ -0.17
SMAD3-202ENST00000439724 ZNF532Q9HCE3 1301 aa13.97□□□□□ -0.17
SMAD3-202ENST00000439724 A0A0G2JLW4 131 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 FGAP02671 866 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 RFC4P35249 363 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 MAP3K12Q12852 859 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 TRAPPC3LQ5T215 181 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 TTLL5Q6EMB2 1281 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 FAM196AQ6ZSG2 479 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 FBXL16Q8N461 479 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 WWC3Q9ULE0 1092 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 ZMYM6O95789 1325 aa13.96□□□□□ -0.17
SMAD3-202ENST00000439724 CARMIL3Q8ND23 1372 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 PRPF40AO75400 957 aaKnown RBP13.95□□□□□ -0.18
SMAD3-202ENST00000439724 F13A1P00488 732 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 PDCP20941 246 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 BCAMP50895 628 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 CELF1Q92879 486 aaKnown RBP13.95□□□□□ -0.18
SMAD3-202ENST00000439724 LRRC4BQ9NT99 713 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 MINPP1Q9UNW1 487 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 MTMR6Q9Y217 621 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 ATP6V1DQ9Y5K8 247 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 GOLGA6L3A6NEY3 463 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 RPS8P62241 208 aaKnown RBP13.95□□□□□ -0.18
SMAD3-202ENST00000439724 ALX1Q15699 326 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 SLC27A3Q5K4L6 730 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 TMEM87AQ8NBN3 555 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 BRF1Q92994 677 aa13.95□□□□□ -0.18
SMAD3-202ENST00000439724 GNL3LQ9NVN8 582 aaKnown RBP13.95□□□□□ -0.18
SMAD3-202ENST00000439724 WDR19Q8NEZ3 1342 aa13.94□□□□□ -0.18
SMAD3-202ENST00000439724 TCHHQ07283 1943 aa13.94□□□□□ -0.18
SMAD3-202ENST00000439724 PFKFB2O60825 505 aa13.94□□□□□ -0.18
SMAD3-202ENST00000439724 MBD3O95983 291 aa13.94□□□□□ -0.18
SMAD3-202ENST00000439724 KRT27Q7Z3Y8 459 aa13.94□□□□□ -0.18
SMAD3-202ENST00000439724 CHAMP1Q96JM3 812 aa13.94□□□□□ -0.18
SMAD3-202ENST00000439724 STRBPQ96SI9 672 aaKnown RBP13.94□□□□□ -0.18
SMAD3-202ENST00000439724 LLPHQ9BRT6 129 aaKnown RBP13.94□□□□□ -0.18
SMAD3-202ENST00000439724 ZNF213O14771 459 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 ZBTB22O15209 634 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 PHF14O94880 888 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 EVCP57679 992 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 FGD1P98174 961 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 NFIXQ14938 502 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 TIAM2Q8IVF5 1701 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 MB21D2Q8IYB1 491 aaPredicted RBP13.93□□□□□ -0.18
SMAD3-202ENST00000439724 MAGEB6Q8N7X4 407 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 AIDAQ96BJ3 306 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 CHMP4CQ96CF2 233 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 ANKRD2Q9GZV1 360 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 MYH13Q9UKX3 1938 aa13.93□□□□□ -0.18
SMAD3-202ENST00000439724 SEMA3EO15041 775 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 HMGB2P26583 209 aaKnown RBP13.92□□□□□ -0.18
SMAD3-202ENST00000439724 TM4SF1P30408 202 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 HAND2P61296 217 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 STK3Q13188 491 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 LARP1BQ659C4 914 aaKnown RBP13.92□□□□□ -0.18
SMAD3-202ENST00000439724 NCOA7Q8NI08 942 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 GPT2Q8TD30 523 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 ZNF274Q96GC6 653 aaPredicted RBP13.92□□□□□ -0.18
SMAD3-202ENST00000439724 LRRC2Q9BYS8 371 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 COL1A1P02452 1464 aaPredicted RBP13.92□□□□□ -0.18
SMAD3-202ENST00000439724 PDS5AQ29RF7 1337 aaKnown RBP13.92□□□□□ -0.18
SMAD3-202ENST00000439724 PNPLA7Q6ZV29 1317 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 CHD4Q14839 1912 aa13.92□□□□□ -0.18
SMAD3-202ENST00000439724 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.91□□□□□ -0.18
SMAD3-202ENST00000439724 MCM5P33992 734 aa13.91□□□□□ -0.18
SMAD3-202ENST00000439724 SCRN1Q12765 414 aa13.91□□□□□ -0.18
SMAD3-202ENST00000439724 CAVIN4Q5BKX8 364 aa13.91□□□□□ -0.18
SMAD3-202ENST00000439724 SMARCC2Q8TAQ2 1214 aa13.91□□□□□ -0.18
SMAD3-202ENST00000439724 NBPF3Q9H094 633 aa13.91□□□□□ -0.18
SMAD3-202ENST00000439724 CACNA1SQ13698 1873 aa13.91□□□□□ -0.18
SMAD3-202ENST00000439724 VPS37CA5D8V6 355 aaPredicted RBP13.9□□□□□ -0.18
SMAD3-202ENST00000439724 PATL2C9JE40 543 aaKnown RBP13.9□□□□□ -0.18
SMAD3-202ENST00000439724 MBD4O95243 580 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 GNAT2P19087 354 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 GYG1P46976 350 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 ZNF445P59923 1031 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 APOBRQ0VD83 1088 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 FBXO33Q7Z6M2 555 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 RALYLQ86SE5 291 aaKnown RBP13.9□□□□□ -0.18
SMAD3-202ENST00000439724 CNBD1Q8NA66 436 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 FAM84BQ96KN1 310 aaPredicted RBP13.9□□□□□ -0.18
SMAD3-202ENST00000439724 DENND2AQ9ULE3 1009 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 MAST2Q6P0Q8 1798 aa13.9□□□□□ -0.18
SMAD3-202ENST00000439724 PRC1O43663 620 aa13.9□□□□□ -0.19
SMAD3-202ENST00000439724 MRE11P49959 708 aa13.9□□□□□ -0.19
SMAD3-202ENST00000439724 HMGN5P82970 282 aaKnown RBP13.9□□□□□ -0.19
SMAD3-202ENST00000439724 CAVIN1Q6NZI2 390 aaKnown RBP13.9□□□□□ -0.19
SMAD3-202ENST00000439724 EPB41L4AQ9HCS5 686 aaPredicted RBP13.9□□□□□ -0.19
SMAD3-202ENST00000439724 LRP2BPQ9P2M1 347 aa13.9□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms