RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 PLEKHG3A1L390 1219 aa13.84□□□□□ -0.19
NEK1-201ENST00000439128 FAM13AO94988 1023 aa13.84□□□□□ -0.19
NEK1-201ENST00000439128 PLEKHG1Q9ULL1 1385 aa13.84□□□□□ -0.19
NEK1-201ENST00000439128 Q6ZUG5 572 aa13.84□□□□□ -0.19
NEK1-201ENST00000439128 TGFBRAP1Q8WUH2 860 aa13.84□□□□□ -0.19
NEK1-201ENST00000439128 M0QZ92 97 aa13.84□□□□□ -0.19
NEK1-201ENST00000439128 RBM25P49756 843 aaKnown RBP13.84□□□□□ -0.19
NEK1-201ENST00000439128 ATP2B4P23634 1241 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 CARD10Q9BWT7 1032 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 TFIP11Q9UBB9 837 aaKnown RBP13.83□□□□□ -0.2
NEK1-201ENST00000439128 SERPINB2P05120 415 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 GNA11P29992 359 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 ANKRD44Q8N8A2 993 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 KLHDC4Q8TBB5 520 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 LPIN2Q92539 896 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 GOLGA6L10A6NI86 522 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 DNA2P51530 1060 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 RBM27Q9P2N5 1060 aaKnown RBP13.83□□□□□ -0.2
NEK1-201ENST00000439128 SAMD9Q5K651 1589 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 MROH5Q6ZUA9 1318 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 PABPN1LA6NDY0 278 aaKnown RBP13.83□□□□□ -0.2
NEK1-201ENST00000439128 CHMP2AO43633 222 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 MYCP01106 439 aaPredicted RBP13.83□□□□□ -0.2
NEK1-201ENST00000439128 TBC1D9Q6ZT07 1266 aa13.83□□□□□ -0.2
NEK1-201ENST00000439128 ZBTB7AO95365 584 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 PDE1AP54750 535 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 PABPC4Q13310 644 aaKnown RBP eCLIP13.82□□□□□ -0.2
NEK1-201ENST00000439128 TAX1BP1Q86VP1 789 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 TNPO1Q92973 898 aaKnown RBP13.82□□□□□ -0.2
NEK1-201ENST00000439128 ARHGAP29Q52LW3 1261 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 NUP88Q99567 741 aaPredicted RBP13.82□□□□□ -0.2
NEK1-201ENST00000439128 CENPHQ9H3R5 247 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 EFCAB6Q5THR3 1501 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 HARSP12081 509 aaKnown RBP13.82□□□□□ -0.2
NEK1-201ENST00000439128 RBM6P78332 1123 aaKnown RBP13.82□□□□□ -0.2
NEK1-201ENST00000439128 G2E3Q7L622 706 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 DHX37Q8IY37 1157 aaKnown RBP13.82□□□□□ -0.2
NEK1-201ENST00000439128 ANO10Q9NW15 660 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 KDM6BO15054 1643 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 RXRAP19793 462 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 CALML3P27482 149 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 KRT79Q5XKE5 535 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 ZNF710Q8N1W2 664 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 NECAB1Q8N987 351 aa13.82□□□□□ -0.2
NEK1-201ENST00000439128 BIN1O00499 593 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 VAMP4O75379 141 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 SLC1A4P43007 532 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 CERS3Q8IU89 383 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 CCDC117Q8IWD4 279 aaPredicted RBP13.81□□□□□ -0.2
NEK1-201ENST00000439128 CFAP65Q6ZU64 1925 aaKnown RBP13.81□□□□□ -0.2
NEK1-201ENST00000439128 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.81□□□□□ -0.2
NEK1-201ENST00000439128 USH1GQ495M9 461 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 FAM114A1Q8IWE2 563 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 CCDC112Q8NEF3 446 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 CPLX3Q8WVH0 158 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 KIFC2Q96AC6 838 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 SOS1Q07889 1333 aaPredicted RBP13.81□□□□□ -0.2
NEK1-201ENST00000439128 POLR3AO14802 1390 aaPredicted RBP13.81□□□□□ -0.2
NEK1-201ENST00000439128 AZI2Q9H6S1 392 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 TCOF1Q13428 1488 aaKnown RBP13.81□□□□□ -0.2
NEK1-201ENST00000439128 NLRP1Q9C000 1473 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 KIF4AO95239 1232 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 AFMP43652 599 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 MRE11P49959 708 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 MKRN3Q13064 507 aaKnown RBP13.81□□□□□ -0.2
NEK1-201ENST00000439128 FERMT1Q9BQL6 677 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 ASAP1Q9ULH1 1129 aa13.81□□□□□ -0.2
NEK1-201ENST00000439128 PSDA5PKW4 1024 aaPredicted RBP13.8□□□□□ -0.2
NEK1-201ENST00000439128 KRT2P35908 639 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 GCKRQ14397 625 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 ISM2Q6H9L7 571 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 TRIM6Q9C030 488 aaPredicted RBP13.8□□□□□ -0.2
NEK1-201ENST00000439128 SDSP20132 328 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 CTSWP56202 376 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 AXDND1Q5T1B0 1012 aaPredicted RBP13.8□□□□□ -0.2
NEK1-201ENST00000439128 BABAM1Q9NWV8 329 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 TTC41PQ6P2S7 1318 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 PRKAG2Q9UGJ0 569 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 DDX39AO00148 427 aaKnown RBP13.8□□□□□ -0.2
NEK1-201ENST00000439128 PRDM1O75626 825 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 SPATA5Q8NB90 893 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 TRIM47Q96LD4 638 aa13.8□□□□□ -0.2
NEK1-201ENST00000439128 BMP15O95972 392 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 TNNI3KQ59H18 835 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 FPGT-TNNI3KV9GXZ4 949 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 MCM7P33993 719 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 ASIC1P78348 528 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 IQCEQ6IPM2 695 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 ARMC9Q7Z3E5 817 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 SKAP1Q86WV1 359 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 RBM28Q9NW13 759 aaKnown RBP13.79□□□□□ -0.2
NEK1-201ENST00000439128 MRVI1Q9Y6F6 885 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 KANK3Q6NY19 840 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 BRINP3Q76B58 766 aa13.79□□□□□ -0.2
NEK1-201ENST00000439128 CCDC171Q6TFL3 1326 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 NCAPG2Q86XI2 1143 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 TBC1D5Q92609 795 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 BACH2Q9BYV9 841 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 CLRN2A0PK11 232 aa13.78□□□□□ -0.2
NEK1-201ENST00000439128 HOXB7P09629 217 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms