RNA–Protein interactions for RNA: ENST00000431429.1

HMGB1P27-201, Transcript of high mobility group box 1 pseudogene 27, humanhuman

BASIC

Gene HMGB1P27, Length 603 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P27-201ENST00000431429 LMNB2Q03252 620 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 GNL2Q13823 731 aaKnown RBP4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 ZNF423Q2M1K9 1284 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 RASIP1Q5U651 963 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 TPTE2Q6XPS3 522 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 SLCO4C1Q6ZQN7 724 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 PLD4Q96BZ4 506 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 GPRASP2Q96D09 838 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 NT5C1AQ9BXI3 368 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 LRRC3Q9BY71 257 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 TANGO6Q9C0B7 1094 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 CLEC4MQ9H2X3 399 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 CACNA2D2Q9NY47 1150 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 STARD13Q9Y3M8 1113 aa4.98□□□□□ -1.61
HMGB1P27-201ENST00000431429 SHROOM4Q9ULL8 1493 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 ELOA3CA0A087WX78 387 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 ELOA3DA6NLF2 546 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 SMNDC1O75940 238 aaKnown RBP eCLIP4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 GHRHP01286 108 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 TFE3P19532 575 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 BMP6P22004 513 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 EIF4A3P38919 411 aaKnown RBP4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 SOX9P48436 509 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 ARID5AQ03989 594 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 ELOA3BQ3SY89 546 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 RNFT1Q5M7Z0 435 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 FBXL19Q6PCT2 694 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 Q6ZNB5 142 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 FAM35AQ86V20 835 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 RELL1Q8IUW5 271 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 KIAA0825Q8IV33 1275 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 ELOA3Q8NG57 546 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 SEC16BQ96JE7 1060 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 SPATA32Q96LK8 384 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 SPON2Q9BUD6 331 aa4.97□□□□□ -1.61
HMGB1P27-201ENST00000431429 PF4P02776 101 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 ESRRAP11474 423 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 CPB1P15086 417 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 EIF2AK2P19525 551 aaKnown RBP4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 BAG6P46379 1132 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 KRT76Q01546 638 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 PCDH1Q08174 1060 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 ZNF252P-AS1Q0IIN9 211 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 CAMK2GQ13555 558 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 PCNX4Q63HM2 1172 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 CEP135Q66GS9 1140 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 SCARA3Q6AZY7 606 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 TTBK2Q6IQ55 1244 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 PDZD3Q86UT5 571 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 CCDC84Q86UT8 332 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 TRIM42Q8IWZ5 723 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 CACTIN-AS1Q8N1I8 211 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 ZNF296Q8WUU4 475 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 NRSN2Q9GZP1 204 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 SOX17Q9H6I2 414 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 TMEM39AQ9NV64 488 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 TRIM33Q9UPN9 1127 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 TLR6Q9Y2C9 796 aa4.96□□□□□ -1.62
HMGB1P27-201ENST00000431429 IGF1RP08069 1367 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 FAM221AA4D161 298 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 NEURL1BA8MQ27 555 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 PTPRAP18433 802 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 NME2P22392 152 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 DNAJA1P31689 397 aaKnown RBP4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 GBP2P32456 591 aaPredicted RBP4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 CRKP46108 304 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 SRSF11Q05519 484 aaKnown RBP4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 NFX1Q12986 1120 aaKnown RBP4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 C1orf229Q6ZS94 237 aaPredicted RBP4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 FAM196AQ6ZSG2 479 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 SLITRK4Q8IW52 837 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 STK35Q8TDR2 534 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 ASAP3Q8TDY4 903 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 GAL3ST3Q96A11 431 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 SMG9Q9H0W8 520 aaKnown RBP4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 RBSNQ9H1K0 784 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 GGA1Q9UJY5 639 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 GDF2Q9UK05 429 aaPredicted RBP4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 SUPT16HQ9Y5B9 1047 aaKnown RBP4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 ERBB4Q15303 1308 aa4.95□□□□□ -1.62
HMGB1P27-201ENST00000431429 ROBO2Q9HCK4 1378 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 MINDY4BA8MYZ0 360 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 F6X3S4 739 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 EPXP11678 715 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 SELPP16109 830 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 ATP2B1P20020 1258 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 EPHA1P21709 976 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 COL9A3Q14050 684 aaPredicted RBP4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 COL9A2Q14055 689 aaPredicted RBP4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 PSAPL1Q6NUJ1 521 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 ELMSAN1Q6PJG2 1045 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 GOLGA6L1Q8N7Z2 621 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 DHX38Q92620 1227 aaKnown RBP4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 COL25A1Q9BXS0 654 aaPredicted RBP4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 PRDM6Q9NQX0 595 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 LRRC4BQ9NT99 713 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 CYP8B1Q9UNU6 501 aa4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 NSFL1CQ9UNZ2 370 aaKnown RBP4.94□□□□□ -1.62
HMGB1P27-201ENST00000431429 H3BRJ5 948 aa4.93□□□□□ -1.62
HMGB1P27-201ENST00000431429 SOX1O00570 391 aaPredicted RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms