RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 RBM6P78332 1123 aaKnown RBP13.18□□□□□ -0.3
USP4-205ENST00000431357 BRAPQ7Z569 592 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 KCNG4Q8TDN1 519 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 CACTINQ8WUQ7 758 aaKnown RBP13.18□□□□□ -0.3
USP4-205ENST00000431357 ANKRD7Q92527 254 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 DDX17Q92841 729 aaKnown RBP13.18□□□□□ -0.3
USP4-205ENST00000431357 OSBP2Q969R2 916 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 ZNF594Q96JF6 807 aaPredicted RBP13.18□□□□□ -0.3
USP4-205ENST00000431357 ZBTB3Q9H5J0 574 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 WDR17Q8IZU2 1322 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 TNNT1P13805 278 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 FDPSP14324 419 aaKnown RBP13.18□□□□□ -0.3
USP4-205ENST00000431357 FOSBP53539 338 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 SLFNL1Q499Z3 407 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 ILDR1Q86SU0 546 aaPredicted RBP13.18□□□□□ -0.3
USP4-205ENST00000431357 LRRC8AQ8IWT6 810 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 FMR1NBQ8N0W7 255 aaPredicted RBP13.18□□□□□ -0.3
USP4-205ENST00000431357 APPBP2Q92624 585 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 PLA2G12BQ9BX93 195 aa13.18□□□□□ -0.3
USP4-205ENST00000431357 PAPPAQ13219 1627 aa13.17□□□□□ -0.3
USP4-205ENST00000431357 FKBP4Q02790 459 aaKnown RBP eCLIP13.17□□□□□ -0.3
USP4-205ENST00000431357 TCIRG1Q13488 830 aa13.17□□□□□ -0.3
USP4-205ENST00000431357 DHX8Q14562 1220 aaKnown RBP13.17□□□□□ -0.3
USP4-205ENST00000431357 NCOA7Q8NI08 942 aa13.17□□□□□ -0.3
USP4-205ENST00000431357 TSC1Q92574 1164 aa13.17□□□□□ -0.3
USP4-205ENST00000431357 C8orf76Q96K31 380 aa13.17□□□□□ -0.3
USP4-205ENST00000431357 PUS3Q9BZE2 481 aaKnown RBP13.17□□□□□ -0.3
USP4-205ENST00000431357 FTOQ9C0B1 505 aaKnown RBP eCLIP13.17□□□□□ -0.3
USP4-205ENST00000431357 POLR3EQ9NVU0 708 aa13.17□□□□□ -0.3
USP4-205ENST00000431357 PCDHA7Q9UN72 937 aa13.17□□□□□ -0.3
USP4-205ENST00000431357 STK38Q15208 465 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 SF3A1Q15459 793 aaKnown RBP13.16□□□□□ -0.3
USP4-205ENST00000431357 TPD52L1Q16890 204 aaPredicted RBP13.16□□□□□ -0.3
USP4-205ENST00000431357 WASHC4Q2M389 1173 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 CCDC144BQ3MJ40 725 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 TTLL5Q6EMB2 1281 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 DHX40Q8IX18 779 aaKnown RBP13.16□□□□□ -0.3
USP4-205ENST00000431357 CCDC144CPQ8IYA2 1237 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 MB21D2Q8IYB1 491 aaPredicted RBP13.16□□□□□ -0.3
USP4-205ENST00000431357 PDCL2Q8N4E4 241 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 LINC00301Q8NCQ3 95 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 XAGE2Q96GT9 111 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 BPIFA3Q9BQP9 254 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 TNS2Q63HR2 1409 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 A0A0G2JLW4 131 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 PRC1O43663 620 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 PCCAP05165 728 aaPredicted RBP13.16□□□□□ -0.3
USP4-205ENST00000431357 GSDMDP57764 484 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 GUCY1B3Q02153 619 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 ZRSR1Q15695 479 aaKnown RBP13.16□□□□□ -0.3
USP4-205ENST00000431357 CHST3Q7LGC8 479 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 RALYLQ86SE5 291 aaKnown RBP13.16□□□□□ -0.3
USP4-205ENST00000431357 FBXO18Q8NFZ0 1043 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 SDF4Q9BRK5 362 aa13.16□□□□□ -0.3
USP4-205ENST00000431357 FGAP02671 866 aa13.15□□□□□ -0.3
USP4-205ENST00000431357 TOM1L2Q6ZVM7 507 aa13.15□□□□□ -0.3
USP4-205ENST00000431357 C16orf45Q96MC5 204 aaPredicted RBP13.15□□□□□ -0.3
USP4-205ENST00000431357 TEX13AQ9BXU3 409 aaPredicted RBP13.15□□□□□ -0.3
USP4-205ENST00000431357 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.15□□□□□ -0.36e-7■■■■□ 23.1
USP4-205ENST00000431357 KCND1Q9NSA2 647 aa13.15□□□□□ -0.3
USP4-205ENST00000431357 IMPACTQ9P2X3 320 aa13.15□□□□□ -0.3
USP4-205ENST00000431357 KLF18A0A0U1RQI7 1052 aa13.15□□□□□ -0.3
USP4-205ENST00000431357 ZNF213O14771 459 aa13.15□□□□□ -0.3
USP4-205ENST00000431357 CPLX1O14810 134 aa13.15□□□□□ -0.3
USP4-205ENST00000431357 CSF1RP07333 972 aa13.15□□□□□ -0.3
USP4-205ENST00000431357 ORC3Q9UBD5 711 aaPredicted RBP13.15□□□□□ -0.3
USP4-205ENST00000431357 GOLGA8BA8MQT2 603 aa13.14□□□□□ -0.31
USP4-205ENST00000431357 SPTLC2O15270 562 aa13.14□□□□□ -0.31
USP4-205ENST00000431357 TPM4P67936 248 aa13.14□□□□□ -0.31
USP4-205ENST00000431357 MYSM1Q5VVJ2 828 aa13.14□□□□□ -0.31
USP4-205ENST00000431357 TAF3Q5VWG9 929 aa13.14□□□□□ -0.31
USP4-205ENST00000431357 SYNE3Q6ZMZ3 975 aa13.14□□□□□ -0.31
USP4-205ENST00000431357 CCDC112Q8NEF3 446 aa13.14□□□□□ -0.31
USP4-205ENST00000431357 ZNF512BQ96KM6 892 aaPredicted RBP13.14□□□□□ -0.31
USP4-205ENST00000431357 KIAA1468Q9P260 1216 aa13.14□□□□□ -0.31
USP4-205ENST00000431357 FOXP2O15409 715 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 IL2RBP14784 551 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 ADORA1P30542 326 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 IFIT5Q13325 482 aaKnown RBP13.13□□□□□ -0.31
USP4-205ENST00000431357 PPP4R3BQ5MIZ7 849 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 KIF6Q6ZMV9 814 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 AOPEPQ8N6M6 819 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 HPS5Q9UPZ3 1129 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 KIF2AO00139 706 aaPredicted RBP13.13□□□□□ -0.31
USP4-205ENST00000431357 KIF20AO95235 890 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 SKILP12757 684 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 ZAP70P43403 619 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 TRDNQ13061 729 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 TTF1Q15361 905 aaPredicted RBP13.13□□□□□ -0.31
USP4-205ENST00000431357 CEP135Q66GS9 1140 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 ZBTB38Q8NAP3 1195 aaPredicted RBP13.13□□□□□ -0.31
USP4-205ENST00000431357 CARD10Q9BWT7 1032 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 OSBPL5Q9H0X9 879 aaPredicted RBP13.13□□□□□ -0.31
USP4-205ENST00000431357 PRDM11Q9NQV5 511 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 NWD2Q9ULI1 1742 aa13.13□□□□□ -0.31
USP4-205ENST00000431357 CDHR2Q9BYE9 1310 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 A0A1B0GVL5 298 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 CCDC69A6NI79 296 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 GPAA1O43292 621 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 CDKL5O76039 1030 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms