RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CLN3Q13286 438 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 COL9A2Q14055 689 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-207ENST00000419472 TNNI3KQ59H18 835 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 FAM13BQ9NYF5 915 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 KANSL3Q9P2N6 904 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 SYNJ2O15056 1496 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 GAPVD1Q14C86 1478 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 FAM205CA6NFA0 338 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 KCNQ2O43526 872 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 LSM11P83369 360 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS13A-207ENST00000419472 AXDND1Q5T1B0 1012 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-207ENST00000419472 SYCP2LQ5T4T6 812 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 KRT26Q7Z3Y9 468 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 SUSD3Q96L08 255 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 OXCT2Q9BYC2 517 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-207ENST00000419472 EHD4Q9H223 541 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 MYCLP1P12525 358 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 CBX2Q14781 532 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 TCEA2Q15560 299 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 NFE2Q16621 373 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 C4orf46Q504U0 113 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 BNC2Q6ZN30 1099 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 C11orf96Q7Z7L8 435 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 RHPN1Q8TCX5 695 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 THAP3Q8WTV1 239 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 PNMA2Q9UL42 364 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 AQRO60306 1485 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 SNAPC4Q5SXM2 1469 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 MEN1O00255 615 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 TSPAN6O43657 245 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 CYP2E1P05181 493 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 TFE3P19532 575 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 INPP5BP32019 993 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 MCM4P33991 863 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 GIPRP48546 466 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 EIF6P56537 245 aaKnown RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 SLITRK4Q8IW52 837 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 SLC39A13Q96H72 371 aa6.68□□□□□ -1.34
VPS13A-207ENST00000419472 NIFKQ9BYG3 293 aaKnown RBP6.68□□□□□ -1.34
VPS13A-207ENST00000419472 ADAMTS12P58397 1594 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 CLASP1Q7Z460 1538 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 SH3BP5O60239 455 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 PLA2G4AP47712 749 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 TJAP1Q5JTD0 557 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 ANKRD24Q8TF21 1146 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 ABCB6Q9NP58 842 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 A0A1W2PP55 124 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 POTEB3A0JP26 581 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 PPP2R5EQ16537 467 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 SPTY2D1Q68D10 685 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-207ENST00000419472 POTEBQ6S5H4 581 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 FAM196AQ6ZSG2 479 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 C14orf80Q86SX3 495 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 AIDAQ96BJ3 306 aa6.67□□□□□ -1.34
VPS13A-207ENST00000419472 SHTN1A0MZ66 631 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 SCGB1D2O95969 90 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 F13A1P00488 732 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 STAT3P40763 770 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 MRM1Q6IN84 353 aaKnown RBP6.66□□□□□ -1.34
VPS13A-207ENST00000419472 RUFY4Q6ZNE9 571 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 AGBL1Q96MI9 1066 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 FERD3LQ96RJ6 166 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 ZSCAN10Q96SZ4 725 aaPredicted RBP6.66□□□□□ -1.34
VPS13A-207ENST00000419472 ANKIB1Q9P2G1 1089 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 PAGE1O75459 146 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 SSRP1Q08945 709 aaKnown RBP6.66□□□□□ -1.34
VPS13A-207ENST00000419472 JMYQ8N9B5 988 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 TERF2IPQ9NYB0 399 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 CUL7Q14999 1698 aa6.66□□□□□ -1.34
VPS13A-207ENST00000419472 A0A087X0B3 334 aa6.65□□□□□ -1.34
VPS13A-207ENST00000419472 CCDC189A1A4V9 331 aa6.65□□□□□ -1.34
VPS13A-207ENST00000419472 DDAH1O94760 285 aa6.65□□□□□ -1.34
VPS13A-207ENST00000419472 EMP3P54852 163 aa6.65□□□□□ -1.34
VPS13A-207ENST00000419472 PPP2R5AQ15172 486 aa6.65□□□□□ -1.34
VPS13A-207ENST00000419472 TM4SF20Q53R12 229 aa6.65□□□□□ -1.34
VPS13A-207ENST00000419472 C6orf15Q6UXA7 325 aaPredicted RBP6.65□□□□□ -1.34
VPS13A-207ENST00000419472 FNDC3AQ9Y2H6 1198 aaKnown RBP6.65□□□□□ -1.34
VPS13A-207ENST00000419472 WASHC2CQ9Y4E1 1318 aa6.65□□□□□ -1.34
VPS13A-207ENST00000419472 KATNA1O75449 491 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 ADH1CP00326 375 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 LDHAP00338 332 aaKnown RBP6.65□□□□□ -1.35
VPS13A-207ENST00000419472 ADH1AP07327 375 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 NFKB2Q00653 900 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 TMEM214Q6NUQ4 689 aaKnown RBP6.65□□□□□ -1.35
VPS13A-207ENST00000419472 DTHD1Q6ZMT9 781 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 GK5Q6ZS86 529 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 IL17RAQ96F46 866 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 STAC3Q96MF2 364 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 TMX1Q9H3N1 280 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 GEMIN8Q9NWZ8 242 aaKnown RBP6.65□□□□□ -1.35
VPS13A-207ENST00000419472 ZMYM5Q9UJ78 669 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 RIMBP3CA6NJZ7 1639 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 RIMBP3BA6NNM3 1639 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 RIMBP3Q9UFD9 1639 aa6.65□□□□□ -1.35
VPS13A-207ENST00000419472 TDRD9Q8NDG6 1382 aaKnown RBP6.65□□□□□ -1.35
VPS13A-207ENST00000419472 ENC1O14682 589 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 CES1P23141 567 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 VEGFBP49765 207 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 ARSDP51689 593 aa6.64□□□□□ -1.35
VPS13A-207ENST00000419472 HSP90AB4PQ58FF6 505 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms