RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 CHGBP05060 677 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 FAM160A1Q05DH4 1040 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 PPP2R3AQ06190 1150 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 TRIM65Q6PJ69 517 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 FUT8Q9BYC5 575 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 UBXN6Q9BZV1 441 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 PLEKHA4Q9H4M7 779 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 YY1AP1Q9H869 796 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 PRDM11Q9NQV5 511 aa17.02■□□□□ 0.31
NCKIPSD-204ENST00000416649 ATP8B1O43520 1251 aa17.01■□□□□ 0.31
NCKIPSD-204ENST00000416649 AIMP1Q12904 312 aaKnown RBP17.01■□□□□ 0.31
NCKIPSD-204ENST00000416649 PDE11AQ9HCR9 933 aa17.01■□□□□ 0.31
NCKIPSD-204ENST00000416649 ECHDC1Q9NTX5 307 aa17.01■□□□□ 0.31
NCKIPSD-204ENST00000416649 LONRF2Q1L5Z9 754 aa17.01■□□□□ 0.31
NCKIPSD-204ENST00000416649 GPR161Q8N6U8 529 aaKnown RBP17.01■□□□□ 0.31
NCKIPSD-204ENST00000416649 RNMTO43148 476 aaKnown RBP17■□□□□ 0.31
NCKIPSD-204ENST00000416649 AKAP4Q5JQC9 854 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 CCP110O43303 1012 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 ATP1A3P13637 1013 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 AACSQ86V21 672 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 MAP4K1Q92918 833 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 GPATCH3Q96I76 525 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 FSD1Q9BTV5 496 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 ZSCAN16Q9H4T2 348 aaPredicted RBP17■□□□□ 0.31
NCKIPSD-204ENST00000416649 A0A0D9SFI3 127 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 APPP05067 770 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 KLHDC4Q8TBB5 520 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 WDR24Q96S15 920 aa17■□□□□ 0.31
NCKIPSD-204ENST00000416649 SERPINC1P01008 464 aa16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 EIF4A1P60842 406 aaKnown RBP16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 SF3A1Q15459 793 aaKnown RBP16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 CFAP100Q494V2 611 aa16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 EDC3Q96F86 508 aaKnown RBP16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 DEF6Q9H4E7 631 aa16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 EIF3CLB5ME19 914 aaKnown RBP16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 PROSER3Q2NL68 480 aa16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 HSP90AA4PQ58FG1 418 aa16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 MYCBPQ99417 103 aaPredicted RBP16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 EIF3CQ99613 913 aaKnown RBP16.99■□□□□ 0.31
NCKIPSD-204ENST00000416649 TTC41PQ6P2S7 1318 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 TUBB4AP04350 444 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 FANCCQ00597 558 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 WWC2Q6AWC2 1192 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 PDILTQ8N807 584 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 BOLA2Q9H3K6 86 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 KAT6BQ8WYB5 2073 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 N4BP1O75113 896 aaKnown RBP16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 IVLP07476 585 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 GUCY2CP25092 1073 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 POLA2Q14181 598 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 TOM1L2Q6ZVM7 507 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 EVI5LQ96CN4 794 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 CCDC8Q9H0W5 538 aaPredicted RBP16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 RGPD5Q99666 1765 aa16.98■□□□□ 0.31
NCKIPSD-204ENST00000416649 Q6ZUG5 572 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 RCOR1Q9UKL0 485 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 PLEKHG2Q9H7P9 1386 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 GIGYF1O75420 1035 aaPredicted RBP16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 MAGEA9P43362 315 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 CCT2P78371 535 aaKnown RBP16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 KCNB2Q92953 911 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 FAN1Q9Y2M0 1017 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 SPATA31A3Q5VYP0 1347 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 PI4KAP2A4QPH2 592 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 MYL6BP14649 208 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 TATP17735 454 aaPredicted RBP16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 KARSQ15046 597 aaKnown RBP16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 HSP90AB4PQ58FF6 505 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 PI4KAP1Q8N8J0 262 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 ENGASEQ8NFI3 743 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 CCDC102AQ96A19 550 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 SEC62Q99442 399 aaKnown RBP16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 NCAPGQ9BPX3 1015 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 PUF60Q9UHX1 559 aaKnown RBP16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 HDAC5Q9UQL6 1122 aa16.97■□□□□ 0.31
NCKIPSD-204ENST00000416649 ADD1P35611 737 aaKnown RBP16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 NDUFA8P51970 172 aa16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 UBASH3AP57075 661 aa16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 AMOTQ4VCS5 1084 aa16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 MRPS27Q92552 414 aaKnown RBP16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 DPF2Q92785 391 aa16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 GOLGA1Q92805 767 aa16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 SUGCTQ9HAC7 445 aa16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 KIAA1468Q9P260 1216 aa16.96■□□□□ 0.31
NCKIPSD-204ENST00000416649 ZSCAN12O43309 604 aa16.96■□□□□ 0.3
NCKIPSD-204ENST00000416649 ZNF589Q86UQ0 364 aaPredicted RBP16.96■□□□□ 0.3
NCKIPSD-204ENST00000416649 DHX58Q96C10 678 aa16.96■□□□□ 0.3
NCKIPSD-204ENST00000416649 ZNF396Q96N95 335 aaPredicted RBP16.95■□□□□ 0.3
NCKIPSD-204ENST00000416649 PPP2R2CQ9Y2T4 447 aa16.95■□□□□ 0.3
NCKIPSD-204ENST00000416649 MED1Q15648 1581 aaPredicted RBP16.95■□□□□ 0.3
NCKIPSD-204ENST00000416649 LMTK3Q96Q04 1460 aa16.95■□□□□ 0.3
NCKIPSD-204ENST00000416649 VWA3AA6NCI4 1184 aa16.95■□□□□ 0.3
NCKIPSD-204ENST00000416649 CCDC12Q8WUD4 166 aaPredicted RBP16.95■□□□□ 0.3
NCKIPSD-204ENST00000416649 PCDHA7Q9UN72 937 aa16.95■□□□□ 0.3
NCKIPSD-204ENST00000416649 SLC3A2P08195 630 aaKnown RBP16.94■□□□□ 0.3
NCKIPSD-204ENST00000416649 PRR29P0C7W0 189 aa16.94■□□□□ 0.3
NCKIPSD-204ENST00000416649 TOP1P11387 765 aaKnown RBP16.94■□□□□ 0.3
NCKIPSD-204ENST00000416649 APOBRQ0VD83 1088 aa16.94■□□□□ 0.3
NCKIPSD-204ENST00000416649 SCRN1Q12765 414 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms