RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SLU7O95391 586 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 ZFYP08048 801 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 U2AF2P26368 475 aaKnown RBP eCLIP6.69□□□□□ -1.345e-7■■■■□ 23.2
CCDC88A-203ENST00000412148 CBX1P83916 185 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 COL9A3Q14050 684 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 FAM173BQ6P4H8 233 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 ANKRD13DQ6ZTN6 518 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 STOX1Q6ZVD7 989 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 RIC3Q7Z5B4 369 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 ILDR1Q86SU0 546 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 PLBD2Q8NHP8 589 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 GOLPH3LQ9H4A5 285 aa6.69□□□□□ -1.34
CCDC88A-203ENST00000412148 SNRPA1P09661 255 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 SLFN14P0C7P3 912 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 PDIA3P30101 505 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 NLRP12P59046 1061 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 LINC00301Q8NCQ3 95 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 TSC1Q92574 1164 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 JARID2Q92833 1246 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 USP28Q96RU2 1077 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 TMX1Q9H3N1 280 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 KIAA1468Q9P260 1216 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 TUBE1Q9UJT0 475 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 LAMB2P55268 1798 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 MYH6P13533 1939 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 BECN2A8MW95 431 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 NRDCO43847 1150 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 PPP6R2O75170 966 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 ANXA1P04083 346 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 CMA1P23946 247 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 IL15P40933 162 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 TPM4P67936 248 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 EPHA10Q5JZY3 1008 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 LTV1Q96GA3 475 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 TNS2Q63HR2 1409 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 MEGF6O75095 1541 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 RREB1Q92766 1687 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 MYH2Q9UKX2 1941 aa6.68□□□□□ -1.34
CCDC88A-203ENST00000412148 TPM1P09493 284 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 PSME1Q06323 249 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 CT47A1Q5JQC4 288 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 MSL3Q8N5Y2 521 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 KCTD17Q8N5Z5 321 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 ZMYM6O95789 1325 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 CPDO75976 1380 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 CICQ96RK0 1608 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 ABCA3Q99758 1704 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 PLCH1Q4KWH8 1693 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 E7EWF7 191 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 FDPSP14324 419 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 PHKG2P15735 406 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 FOXO4P98177 505 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 TFCP2Q12800 502 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 NCAPHQ15003 741 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 TERF2Q15554 542 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 E4F1Q66K89 784 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 ATG9AQ7Z3C6 839 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 MPNDQ8N594 471 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 FSIP1Q8NA03 581 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 FBXO18Q8NFZ0 1043 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 DCAF5Q96JK2 942 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 ZNF512BQ96KM6 892 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 PAG1Q9NWQ8 432 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 PCDHA7Q9UN72 937 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 MTMR7Q9Y216 660 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 HPSEQ9Y251 543 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 GOLGA6L9A6NEM1 432 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 RNF113AO15541 343 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 RAD21O60216 631 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 HSPD1P10809 573 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 KMT5BQ4FZB7 885 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 COPS6Q7L5N1 327 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 XAGE3Q8WTP9 111 aa6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 ZNF215Q9UL58 517 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-203ENST00000412148 MYH13Q9UKX3 1938 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 NHSL1Q5SYE7 1610 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 C1orf167Q5SNV9 1468 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 CBFA2T2O43439 604 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 HSP90B1P14625 803 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 BMS1Q14692 1282 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 AXDND1Q5T1B0 1012 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 IFNL2Q8IZJ0 200 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 LRRC59Q96AG4 307 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 FMNL2Q96PY5 1086 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 DBNDD2Q9BQY9 259 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 UBXN6Q9BZV1 441 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 TOGARAM1Q9Y4F4 1720 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 MAST3O60307 1309 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 STK36Q9NRP7 1315 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 ZBTB7CA1YPR0 619 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 CCDC66A2RUB6 948 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 USP27XA6NNY8 438 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 ETF1P62495 437 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 TUBB4BP68371 445 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 MKRN3Q13064 507 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 STK3Q13188 491 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 ANKLE2Q86XL3 938 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 MB21D2Q8IYB1 491 aaPredicted RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms