RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MICALL1Q8N3F8 863 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 CHMP5Q9NZZ3 219 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 NARFQ9UHQ1 456 aa8.42□□□□□ -1.06
SCN9A-202ENST00000409435 KIF28PB7ZC32 967 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 MAP2K1Q02750 393 aaPredicted RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 CDC37L1Q7L3B6 337 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 CPXCR1Q8N123 301 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 PIGBQ92521 554 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 CARMIL3Q8ND23 1372 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 EZRP15311 586 aaKnown RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 SP4Q02446 784 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 AAMPQ13685 434 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 KIF4BQ2VIQ3 1234 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 MICAL1Q8TDZ2 1067 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 CLTCQ00610 1675 aaKnown RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 EIF2AK4Q9P2K8 1649 aaKnown RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 SPDYE3A6NKU9 549 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 KBTBD13C9JR72 458 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 SEPT6Q14141 434 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 RSPH3Q86UC2 560 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 AZI2Q9H6S1 392 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 SMC3Q9UQE7 1217 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 IFIT3O14879 490 aaKnown RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 TLR3O15455 904 aaKnown RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 LINS1Q8NG48 757 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 BICD1Q96G01 975 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 ZNF496Q96IT1 587 aaPredicted RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 SLC12A7Q9Y666 1083 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 ERBB3P21860 1342 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 RABEP1Q15276 862 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 RPAP2Q8IXW5 612 aaPredicted RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 ANKRD35Q8N283 1001 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 FAM193BQ96PV7 902 aaPredicted RBP8.41□□□□□ -1.06
SCN9A-202ENST00000409435 LGR6Q9HBX8 967 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 ZBTB1Q9Y2K1 713 aa8.41□□□□□ -1.06
SCN9A-202ENST00000409435 ABCC3O15438 1527 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 TNPO2O14787 897 aaKnown RBP8.4□□□□□ -1.06
SCN9A-202ENST00000409435 GNAT2P19087 354 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 AOC3Q16853 763 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 CCDC102AQ96A19 550 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 SUDS3Q9H7L9 328 aaPredicted RBP8.4□□□□□ -1.06
SCN9A-202ENST00000409435 MROH5Q6ZUA9 1318 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 EPHX2P34913 555 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 BRIP1Q9BX63 1249 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 BRPF3Q9ULD4 1205 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 NCOA3Q9Y6Q9 1424 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 MAP3K15Q6ZN16 1313 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 ENOX2Q16206 610 aaKnown RBP8.4□□□□□ -1.06
SCN9A-202ENST00000409435 GCC1Q96CN9 775 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 FAM135BQ49AJ0 1406 aa8.4□□□□□ -1.06
SCN9A-202ENST00000409435 ARHGEF5Q12774 1597 aa8.4□□□□□ -1.07
SCN9A-202ENST00000409435 SHTN1A0MZ66 631 aa8.4□□□□□ -1.07
SCN9A-202ENST00000409435 SKIDA1Q1XH10 827 aa8.4□□□□□ -1.07
SCN9A-202ENST00000409435 DEFB115Q30KQ5 88 aa8.4□□□□□ -1.07
SCN9A-202ENST00000409435 NSMFQ6X4W1 530 aa8.4□□□□□ -1.07
SCN9A-202ENST00000409435 SEPT11Q9NVA2 429 aaKnown RBP8.4□□□□□ -1.07
SCN9A-202ENST00000409435 GINS2Q9Y248 185 aa8.4□□□□□ -1.07
SCN9A-202ENST00000409435 AGLP35573 1532 aa8.4□□□□□ -1.07
SCN9A-202ENST00000409435 APLP1P51693 650 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 KRT32Q14532 448 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 FOXD4L5Q5VV16 416 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 KIAA1328Q86T90 577 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 PANK1Q8TE04 598 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 FOXD4L4Q8WXT5 416 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 RTL1A6NKG5 1358 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 ERLIN2O94905 339 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 ALDH1A1P00352 501 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 ABI1Q8IZP0 508 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 CFAP57Q96MR6 1250 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 PNMA2Q9UL42 364 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 CCDC194A0A1B0GVG4 234 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 TAF5LO75529 589 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 ZFYP08048 801 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 DHX8Q14562 1220 aaKnown RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 SASS6Q6UVJ0 657 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 MAGEB6Q8N7X4 407 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 NAP1L1P55209 391 aaKnown RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 GRAPQ13588 217 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 PRPF40BQ6NWY9 871 aaKnown RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 CHST3Q7LGC8 479 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 GRAPLQ8TC17 118 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 METTL22Q9BUU2 404 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 HOMER2Q9NSB8 354 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 VPS37CA5D8V6 355 aaPredicted RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 BIRC2Q13490 618 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 CCDC112Q8NEF3 446 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 ESR2Q92731 530 aa8.39□□□□□ -1.07
SCN9A-202ENST00000409435 CPSF2Q9P2I0 782 aaKnown RBP8.39□□□□□ -1.07
SCN9A-202ENST00000409435 ABCA9Q8IUA7 1624 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 POTEJP0CG39 1038 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 GNAQP50148 359 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 ANKRD1Q15327 319 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 ZNF341Q9BYN7 854 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 TRIM6Q9C030 488 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-202ENST00000409435 FER1L4A9Z1Z3 1794 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 PDE4AP27815 886 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 FAM114A1Q8IWE2 563 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 MIGA1Q8NAN2 632 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 BABAM1Q9NWV8 329 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 ZHX1Q9UKY1 873 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms