RNA–Protein interactions for RNA: ENST00000409357.5

NIF3L1-204, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,679 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-204ENST00000409357 LMOD3Q0VAK6 560 aa12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 CCDC91Q7Z6B0 441 aa12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 CCDC191Q8NCU4 936 aa12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 FLAD1Q8NFF5 587 aa12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 RTF1Q92541 710 aaKnown RBP12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 TACO1Q9BSH4 297 aaKnown RBP12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 CLSTN2Q9H4D0 955 aa12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 MKRN1Q9UHC7 482 aaKnown RBP12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 CEP83Q9Y592 693 aa12.41□□□□□ -0.42
NIF3L1-204ENST00000409357 EFCAB8A8MWE9 144 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 CCDC172P0C7W6 258 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 SKILP12757 684 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 CHMLP26374 656 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 DCTN1Q14203 1278 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 TTC31Q49AM3 519 aaPredicted RBP12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 JAKMIP3Q5VZ66 844 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 MCM10Q7L590 875 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 CERS3Q8IU89 383 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 PPM1EQ8WY54 764 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 SH2B1Q9NRF2 756 aaPredicted RBP12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 DONSONQ9NYP3 566 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 ORC3Q9UBD5 711 aaPredicted RBP12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 NRBP1Q9UHY1 535 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 MTMR6Q9Y217 621 aa12.4□□□□□ -0.42
NIF3L1-204ENST00000409357 GIGYF1O75420 1035 aaPredicted RBP12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 RC3H1Q5TC82 1133 aaKnown RBP12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 INTS5Q6P9B9 1019 aaKnown RBP12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 LUZP1Q86V48 1076 aa12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 ARHGEF1Q92888 912 aaKnown RBP12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 SMARCE1Q969G3 411 aa12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 SCAND2PQ9GZW5 306 aaPredicted RBP12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 DEF6Q9H4E7 631 aa12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 PALD1Q9ULE6 856 aa12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 SMC3Q9UQE7 1217 aa12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 RTCBQ9Y3I0 505 aaKnown RBP12.39□□□□□ -0.43
NIF3L1-204ENST00000409357 CTAGE5O15320 804 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 KCNQ3O43525 872 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 ZNF165P49910 485 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 KRT85P78386 507 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 ERCC6LQ2NKX8 1250 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 CCDC144BQ3MJ40 725 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 ANO6Q4KMQ2 910 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 REXO1L1PQ8IX06 675 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 CCDC144CPQ8IYA2 1237 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 C10orf67Q8IYJ2 551 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 NEK11Q8NG66 645 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 ZNF496Q96IT1 587 aaPredicted RBP12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 TNMDQ9H2S6 317 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 MED4Q9NPJ6 270 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 TTC41PQ6P2S7 1318 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 LOC102724159A0A0B4J2E5 919 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 RPS6KA4O75676 772 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 APPP05067 770 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 TUBB4BP68371 445 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 TEFQ10587 303 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 SNW1Q13573 536 aaKnown RBP12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 IQCB1Q15051 598 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 PWP2Q15269 919 aaKnown RBP12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 TRAPPC3LQ5T215 181 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 OTUD7AQ8TE49 926 aaPredicted RBP12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 UBXN4Q92575 508 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 ZNF592Q92610 1267 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 GTF3C6Q969F1 213 aa12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 UTP14AQ9BVJ6 771 aaKnown RBP12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 SRP68Q9UHB9 627 aaKnown RBP12.38□□□□□ -0.43
NIF3L1-204ENST00000409357 KIAA1551Q9HCM1 1747 aa12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 FIBPO43427 364 aa12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 CYP19A1P11511 503 aaPredicted RBP12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 SMC1AQ14683 1233 aaKnown RBP12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 NFE2L2Q16236 605 aa12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 ARHGAP29Q52LW3 1261 aa12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 ZNF790Q6PG37 636 aa12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 GPR161Q8N6U8 529 aaKnown RBP12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 CCDC150Q8NCX0 1101 aa12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 TM6SF1Q9BZW5 370 aa12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 FAM107BQ9H098 131 aa12.37□□□□□ -0.43
NIF3L1-204ENST00000409357 CCDC69A6NI79 296 aa12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 TBC1D8O95759 1140 aa12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 GYS1P13807 737 aa12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 PDCP20941 246 aa12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 HMGB2P26583 209 aaKnown RBP12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 TRDNQ13061 729 aa12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 TAOK2Q9UL54 1235 aa12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 ZBTB1Q9Y2K1 713 aa12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 KIF13BQ9NQT8 1826 aa12.36□□□□□ -0.43
NIF3L1-204ENST00000409357 USP27XA6NNY8 438 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 NRDCO43847 1150 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 TADA3O75528 432 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 MMP10P09238 476 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 CASTP20810 708 aaKnown RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 OAS2P29728 719 aaKnown RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 CORO7P57737 925 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 DNM1Q05193 864 aaKnown RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 TWISTNBQ3B726 338 aaPredicted RBP12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 LEKR1Q6ZMV7 388 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 TTC5Q8N0Z6 440 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 KCNB2Q92953 911 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 TRERF1Q96PN7 1200 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 CCDC87Q9NVE4 849 aa12.35□□□□□ -0.43
NIF3L1-204ENST00000409357 DNAI1Q9UI46 699 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms