RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KARSQ15046 597 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 ZNF569Q5MCW4 686 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 SLC9C2Q5TAH2 1124 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 VPS18Q9P253 973 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 TNNQ9UQP3 1299 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 PRAG1Q86YV5 1406 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 CC2D2AQ9P2K1 1620 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 PUF60Q9UHX1 559 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 TSPY3P0CV98 308 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 TSPY8P0CW00 308 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 KRT28Q7Z3Y7 464 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 PHF23Q9BUL5 403 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 IQCGQ9H095 443 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 RNF113AO15541 343 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 MAP2K2P36507 400 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 SAMM50Q9Y512 469 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 GNAT2P19087 354 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 GUCA1BQ9UMX6 200 aa11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 ZBTB12Q9Y330 459 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 LUC7L2Q9Y383 392 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-203ENST00000396595 SEC24BO95487 1268 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 FAM160A1Q05DH4 1040 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 HDXQ7Z353 690 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 CCDC97Q96F63 343 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 LZTFL1Q9NQ48 299 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 AKAP4Q5JQC9 854 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 HEATR3Q7Z4Q2 680 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 SREK1Q8WXA9 508 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 SERPINA10Q9UK55 444 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 FERP16591 822 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 UBXN1Q04323 297 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 APOBRQ0VD83 1088 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 ELP1O95163 1332 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 ATP2A1O14983 1001 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 NEK11Q8NG66 645 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 RBSNQ9H1K0 784 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 FAM114A2Q9NRY5 505 aa11.58□□□□□ -0.56
LIMCH1-203ENST00000396595 KRT2P35908 639 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 RPAINQ86UA6 219 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 LMNTD2Q8IXW0 634 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 IQUBQ8NA54 791 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 C6orf50Q9HD87 102 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 PA2G4Q9UQ80 394 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 TNNC1P63316 161 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 DNAJC21Q5F1R6 531 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 BAG1Q99933 345 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 GRIN2AQ12879 1464 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 NAPAP54920 295 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 TUBB2AQ13885 445 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 KRT79Q5XKE5 535 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 NAA16Q6N069 864 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 TUBB2BQ9BVA1 445 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 STX17P56962 302 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 EVCP57679 992 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 EIF4A2Q14240 407 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 FAM76AQ8TAV0 307 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 RHOXF2BP0C7M4 288 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 FBLN1P23142 703 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 GRIPAP1Q4V328 841 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 CAPZA3Q96KX2 299 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 RHOXF2Q9BQY4 288 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 UTP14AQ9BVJ6 771 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 POLKQ9UBT6 870 aa11.57□□□□□ -0.56
LIMCH1-203ENST00000396595 KDM5BQ9UGL1 1544 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 AKR1B15C9JRZ8 316 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 ZWINTO95229 277 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 ZNF445P59923 1031 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 BICD1Q96G01 975 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 CCDC114Q96M63 670 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 PPP2R3AQ06190 1150 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 TSPYL6Q8N831 410 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 TSGA10Q9BZW7 698 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 GPATCH8Q9UKJ3 1502 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 PPP1R2P41236 205 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 TERF1P54274 439 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 ZBTB17Q13105 803 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 CFAP58Q5T655 872 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 RPUSD2Q8IZ73 545 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 RABGAP1Q9Y3P9 1069 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 CPLX4Q7Z7G2 160 aa11.56□□□□□ -0.56
LIMCH1-203ENST00000396595 MTRF1LQ9UGC7 380 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 ZFYVE9O95405 1425 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 PHACTR2O75167 634 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 SELENOSQ9BQE4 189 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 MXRA7P84157 204 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 KRBA2Q6ZNG9 492 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 COMMD10Q9Y6G5 202 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 ZNF853P0CG23 659 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 ZBTB16Q05516 673 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 TRIM14Q14142 442 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 THOC2Q8NI27 1593 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 DCAF8L1A6NGE4 600 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 ZEB2O60315 1214 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 HS2ST1Q7LGA3 356 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 TRMT1LQ7Z2T5 733 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 SMC6Q96SB8 1091 aa11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 EIF2AK4Q9P2K8 1649 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-203ENST00000396595 FANCAO15360 1455 aa11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 DENND4BO75064 1496 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-203ENST00000396595 PPIP5K1Q6PFW1 1433 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms