RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 TSHZ3Q63HK5 1081 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 APBB1IPQ7Z5R6 666 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-204ENST00000395898 TTC14Q96N46 770 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 C19orf44Q9H6X5 657 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 HELLSQ9NRZ9 838 aa6.18□□□□□ -1.42
VPS13C-204ENST00000395898 SHANK2Q9UPX8 1470 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 HS1BP3Q53T59 392 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 MMRN2Q9H8L6 949 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 DACT1Q9NYF0 836 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 UHRF1BP1Q6BDS2 1440 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 ZNF608Q9ULD9 1512 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-204ENST00000395898 SKILP12757 684 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 SYT1P21579 422 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 MAGEB6Q8N7X4 407 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 GLT8D2Q9H1C3 349 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 SH2D4AQ9H788 454 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 MCM9Q9NXL9 1143 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 CCDC65Q8IXS2 484 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 LDHBP07195 334 aaKnown RBP6.17□□□□□ -1.42
VPS13C-204ENST00000395898 EIF4A2Q14240 407 aaKnown RBP6.17□□□□□ -1.42
VPS13C-204ENST00000395898 CEP128Q6ZU80 1094 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 CCDC42Q96M95 316 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 GCC2Q8IWJ2 1684 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 ATP2A2P16615 1042 aaKnown RBP6.17□□□□□ -1.42
VPS13C-204ENST00000395898 NEK11Q8NG66 645 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 EYA3Q99504 573 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 FRMD4BQ9Y2L6 1034 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 CHRNA2Q15822 529 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 NECAB1Q8N987 351 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 IQUBQ8NA54 791 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 DENND2AQ9ULE3 1009 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 PICALMQ13492 652 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 TXNDC16Q9P2K2 825 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 ZNF219Q9P2Y4 722 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-204ENST00000395898 CNPY2Q9Y2B0 182 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 FAM13AO94988 1023 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 ASIC1P78348 528 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 GSTA5Q7RTV2 222 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 TCHPQ9BT92 498 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 PCDHB15Q9Y5E8 787 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 RNF113AO15541 343 aaKnown RBP6.17□□□□□ -1.42
VPS13C-204ENST00000395898 HSPA4P34932 840 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 CREB3L3Q68CJ9 461 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 JDP2Q8WYK2 163 aa6.17□□□□□ -1.42
VPS13C-204ENST00000395898 LLPHQ9BRT6 129 aaKnown RBP6.17□□□□□ -1.42
VPS13C-204ENST00000395898 YTHDC2Q9H6S0 1430 aaKnown RBP6.16□□□□□ -1.42
VPS13C-204ENST00000395898 DNM1Q05193 864 aaKnown RBP6.16□□□□□ -1.42
VPS13C-204ENST00000395898 KIAA1524Q8TCG1 905 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 POLKQ9UBT6 870 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 GAS8O95995 478 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 MARCKSP29966 332 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-204ENST00000395898 KRT222Q8N1A0 295 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 NAP1L3Q99457 506 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-204ENST00000395898 TMX1Q9H3N1 280 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 UBXN1Q04323 297 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 CNGA4Q8IV77 575 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 C8orf58Q8NAV2 365 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 GOLGA1Q92805 767 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 KIFAP3Q92845 792 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 WDR62O43379 1518 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 PPP2R5BQ15173 497 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 CEP85Q6P2H3 762 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 ADAMTS12P58397 1594 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 MAPKBP1O60336 1514 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 IRS4O14654 1257 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-204ENST00000395898 MCM7P33993 719 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 NOLC1Q14978 699 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS13C-204ENST00000395898 CDCA7Q9BWT1 371 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-204ENST00000395898 TTC6Q86TZ1 520 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 AOPEPQ8N6M6 819 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 TMEM87BQ96K49 555 aa6.16□□□□□ -1.42
VPS13C-204ENST00000395898 AK2P54819 239 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 MTUS1Q9ULD2 1270 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 V9GYY5 206 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 PLCD1P51178 756 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 MRPS9P82933 396 aaKnown RBP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 PLS1Q14651 629 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 NSFL1CQ9UNZ2 370 aaKnown RBP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 TSPOAP1O95153 1857 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 NMIQ13287 307 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 RAB3IL1Q8TBN0 382 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 LRRC59Q96AG4 307 aaKnown RBP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 DHX58Q96C10 678 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 GCP02774 474 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 VAV2P52735 878 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 PARP10Q53GL7 1025 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 RILPL1Q5EBL4 403 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 DHX37Q8IY37 1157 aaKnown RBP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 BICC1Q9H694 974 aaKnown RBP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 TCOF1Q13428 1488 aaKnown RBP6.15□□□□□ -1.42
VPS13C-204ENST00000395898 ELP1O95163 1332 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 VAMP4O75379 141 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 TYRO3Q06418 890 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 TRIM14Q14142 442 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 ZNF354CQ86Y25 554 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 FBF1Q8TES7 1133 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 CSRNP2Q9H175 543 aa6.15□□□□□ -1.42
VPS13C-204ENST00000395898 DNAI1Q9UI46 699 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms